Using MARTINI is not as automatic as using most of the force fields available
with Gromacs. At the MARTINI site, there are several scripts that will generate
the correct structure and topology files:
http://md.chem.rug.nl/~marrink/MARTINI/Parameters.html
-Justin
Anirban Ghosh wrote:
Hi ALL,
I want to run CGMD using MARTINI force field in GROMACS. I request you
to kindly explain me how to integrate the MARTINI Force Field in
GROMACS. In GROMACS3.3 when we run
the pdb2gmx command, we get the choice of 9 different force fields, but
MARTINI is
not there. How should integrate it?
Regards,
*Anirban Ghosh*
*M.Tech Bioinformatics*
*University of Hyderabad*
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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