Hi, I am new to Replica exchange molecular dynamics. I obtained the optimal temperature distribution based on the lowest and highest tempearture and exchange probability from the REMD caclulator , available through the gromacs homepage. There were 17 temperaure values as output. I prepared 17 ".tpr" files based on the temperatures. What I want to know is that at each attempted step of replica exchange, how many pairs of replicas will be exchanged, and how this is decided?
Thanks in advance, Sarbani
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