On Apr 26, 2012, at 11:37 AM, Albert wrote: > hello: > it can find mdrun correctly. and it is only give me the log file as I > mentioned in previous thread. What files are produced by g_tune_pme? Is there a benchtest.log? Can you cat its contents?
Carsten > > thank you very much > > On 04/26/2012 09:53 AM, Carsten Kutzner wrote: >> Hi, >> >> what output does g_tune_pme provide? What is in "log" and in >> "perf.out"? >> Can it find the correct mdrun / mpirun executables? >> >> Carsten >> >> >> On Apr 26, 2012, at 9:28 AM, Albert wrote: >> >>> Hello: >>> Does anybody have any idea how to run g_tune_pme in a cluster? I tried >>> many times with following command: >>> >>> g_tune_pme_d -v -s npt_01.tpr -o npt_01.trr -cpo npt_01.cpt -g npt_01.log >>> -launch -nt 24> log& >>> >>> but it always failed. >>> >>> >>> Option Type Value Description >>> ------------------------------------------------------ >>> -[no]h bool no Print help info and quit >>> -[[CUDANodeA:03384] [[60523,1],22] ORTE_ERROR_LOG: A message is attempting >>> to be sent to a process whose contact information is unknown in file >>> rml_oob_send.c at line 105 >>> [CUDANodeA:03384] [[60523,1],22] could not get route to [[INVALID],INVALID] >>> [CUDANodeA:03384] [[60523,1],22] ORTE_ERROR_LOG: A message is attempting to >>> be sent to a process whose contact information is unknown in file >>> base/plm_base_proxy.c at line 86 >>> >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www interface >>> or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
