Hello Anirban:
thanks for kind comments.
How long did you mean " fairly long simulation time" ? does 1u ns
belongs to this range? CHARMM36 ff is available in gromacs website and
we can download it and put them into top directory and then it works. It
is not need to make any modification by ourselves.
best
Albert
On 04/26/2012 11:53 AM, Anirban Ghosh wrote:
Hello Albert,
Thanks.
Yes, CHARMM36 indeed handles lipids very well. But currently GROMACS
4.5.5 provides only the option for CHARMM27 FF and I found that ff43a1
very well preserves the characters of both the protein as well as the
lipids for fairly long simulation time, hence I used that FF in the
tutorial. But one can surely add CHARMM36 to GROAMCS by doing all the
necessary topology conversions.
Regards,
Anirban
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