-cifti-correlation-gradient does a second order correlation (where you had used eta^2), taking a .dconn.nii as its input. The first order correlation is done with -cifti-correlation from a .dtseries.nii to a .dconn.nii.
I already explained about click view maps for .dconn.nii. ;)
Peace,
Matt.
From: Alex Cohen <alexco...@gmail.com>
Reply-To: "alexco...@gmail.com" <alexco...@gmail.com> Date: Wednesday, April 22, 2015 at 3:19 PM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] cifti-correlation-gradient settings and surface-based math? Interesting,
thanks for the numbers. I am using FEAT and ICA+FIX as my preprocessing as well, so that should be less of an issue.
Of note, my impression from the wb_command help was that correlation-gradient was doing BOTH correlation and gradient->average... wrapped up into one tool. is this not correct and one needs to run cifti-correlation prior???
(also, any idea regarding the click-view of correlation maps? Donna?)
-Alex
---------------------------------------------------------------- Alexander Li Cohen, M.D., Ph.D. Resident Physician Child and Adolescent Neurology E-mail:
cohen.alexan...@mayo.edu (Medical/Science Email)
E-mail: alexco...@gmail.com (Lifetime Email) Mayo Clinic 200 First Street SW Rochester, MN 55905 mayoclinic.org ---------------------------------------------------------------- On Wed, Apr 22, 2015 at 2:45 PM, Glasser, Matthew
<glass...@wusm.wustl.edu> wrote:
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- [HCP-Users] cifti-correlation-gradient settings and surfa... Alex Cohen
- Re: [HCP-Users] cifti-correlation-gradient settings ... Glasser, Matthew
- Re: [HCP-Users] cifti-correlation-gradient setti... Alex Cohen
- Re: [HCP-Users] cifti-correlation-gradient s... Glasser, Matthew
- Re: [HCP-Users] cifti-correlation-gradie... Alex Cohen