Okay, I will use the regular data then and try to process it so that my algorithm runs on it. Do you guys know by any chance a good way to project the surface data contained in the cifti-files into a flat 2D map given in the flat gifti files? (I am trying to get the cifti data into a 2D matrix so I can convolve with a Gaussian kernel).
On Tue, Jul 26, 2016 at 12:46 PM, Elam, Jennifer <e...@wustl.edu> wrote: > Hi Amrit, > > The data in Scene 4 of the WB Tutorial data is almost 5 years old now, > CP10101 is a subject from the pilot phase of the HCP, well before we were > releasing data and well before we were cleaning the data with FIX. The > reason that scene is there is simply to display the concept of BOLD > fluctuations in an fMRI time series-- it is not the really meant to be data > that you use any analysis tools on since we have since released several > improved versions of the fMRI data on now over 800 subjects. > > > The Group Average Workbench dataset available in ConnectomeDB > <https://db.humanconnectome.org/data/projects/HCP_900> is up to date with > data from the current 900 Subjects Release (of December 2015) > > > Yes, there is extensive documentation on the many individual subject and > group average analyzed data currently available for download in > ConnectomeDB in the 900 Subjects Reference Manual > <https://www.humanconnectome.org/documentation/S900/HCP_S900_Release_Reference_Manual.pdf> > (you can also get to it in the Documentation section of the HCP public > website) and more info in the publication references therein. It's a long > document, but there's a lot of valuable information there. > > > Best, > > Jenn > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > e...@wustl.edu > www.humanconnectome.org > > ------------------------------ > *From:* hcp-users-boun...@humanconnectome.org < > hcp-users-boun...@humanconnectome.org> on behalf of Amrit Kashyap < > amrit...@gmail.com> > *Sent:* Tuesday, July 26, 2016 11:34:48 AM > *To:* Glasser, Matthew > *Cc:* hcp-users@humanconnectome.org > *Subject:* Re: [HCP-Users] Workbench Tutorial Data > > Yes, I am using that because I thought that was the most processed data > available. I think someone might have spatially smoothed this raw signal > and then added it to the tutorial data? > > > On Tue, Jul 26, 2016 at 11:08 AM, Glasser, Matthew <glass...@wustl.edu> > wrote: > >> Are you using the FIX cleaned HCP data? It will have _hp2000_clean in >> the file name. >> >> Peace, >> >> Matt. >> >> From: <hcp-users-boun...@humanconnectome.org> on behalf of Amrit Kashyap >> <amrit...@gmail.com> >> Date: Tuesday, July 26, 2016 at 9:52 AM >> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: [HCP-Users] Workbench Tutorial Data >> >> Hey HCP, this might not be the correct place to post this, but I have >> been using the rsfMRI data provided by the HCP workbench tutorial in scene >> 4 (CP10101). It looks like there has been some preprocessing done to the >> rsfMRI dtseries but I am not sure what it is. My own analysis techniques >> seem to work pretty well on this processed data but perform pretty poorly >> on the raw data. Is there any documentation/paper you could direct me to? >> Thanks >> Amrit >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
