TimH - you mean this one? On Jul 7, 2016, at 10:26 AM, Dierker, Donna <do...@wustl.edu<mailto:do...@wustl.edu>> wrote:
You need to adjust your overlay settings; see attached capture. Make sure Threshold Type is set to On. [cid:B7646768-2537-4828-8045-A6B646996AD8@wustl.edu] On Dec 5, 2016, at 11:16 AM, Timothy Hendrickson <hendr...@umn.edu<mailto:hendr...@umn.edu>> wrote: Hi Donna, Could you please re-attach the screen capture that you took for Vasudev? I cannot find it... I also am looking into how to observe significance levels with a threshold of p<0.05. Respectfully, -Tim You need to adjust your overlay settings; see attached capture. Make sure Threshold Type is set to On. ________________________________ From: hcp-users-boun...@humanconnectome.org<http://humanconnectome.org> < hcp-users-boun...@humanconnectome.org<http://humanconnectome.org> > on behalf of Dev vasu < vasudevamurthy.devulapa...@gmail.com<http://gmail.com> > Sent: Thursday, July 7, 2016 10:03:28 AM To: Dierker, Donna Cc: < hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] thresholding the data to p-value Dear madam, I don't want to write to an ROI volume, i just want to observe activation levels with a threshold of p<0.05. Thanks Vasudev On 7 July 2016 at 16:31, Dierker, Donna < do...@wustl.edu<mailto:do...@wustl.edu >> wrote: Hi Vasudev, I'm pretty sure wb_view can display voxels within a range of values (inside upper and lower limit), but I think you mean threshold and write a ROI volume. For that, try: wb_command -metric-math "(x<${Pthresh})" ${PthreshFile} -var x ${PstatFile} Donna ________________________________ From: hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org > < hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org >> on behalf of Dev vasu < vasudevamurthy.devulapa...@gmail.com<mailto:vasudevamurthy.devulapa...@gmail.com >> Sent: Wednesday, July 6, 2016 12:04:50 PM To: Harms, Michael; < hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org >> Subject: [HCP-Users] thresholding the data to p-value Dear sir, I would like to threshold my results to a p-value of p<0.05 and i couldn't do it from workbench GUI, I can only threshold the data to percentage changes. Please kindly let me know how i can possibly threshold the results to real p-stats. Thanks Vasudev Timothy Hendrickson Department of Psychiatry University of Minnesota Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
