Thanks Bob,
I narrowed down the problem to the jmolScriptWaitAsArray() function :
surprisingly when I replace it by jmolScript(), I can load whatever
file I want. On the contrary jmolScriptWaitAsArray() gives me access
denial errors...
Paul
Le 30 août 08 à 15:07, Robert Hanson a écrit :
Paul, check out this page to see how yours might be different.
http://chemapps.stolaf.edu/jmol/docs/examples-11/simple.htm
It's using the signed applet and working just fine. Maybe has to be
newer than 11.6.RC8, but I don't think so. It should load files
from the PDB using "load =xxxx" and files from your hard drive
using, for example:
load c:/temp/caffeine.xyz
Also, the Jmol Protein Explorer is using using the signed applet
without a hitch.
Bob
On Sat, Aug 30, 2008 at 7:32 AM, Paul Pillot <[EMAIL PROTECTED]
orleans-tours.fr> wrote:
I am setting up a web page with the ability to load local files as
well as external files (for example, files coming from the pdb)
When I run the page locally, the applet is able to load any local
file, but sends an error message (Jmol 11.6.RC8, Mac OSX, Safari):
java.security.AccessControlException: access denied
(java.net.SocketPermission www.rcsb.org:80 connect,resolve)
openFile(http://www.rcsb.org/pdb/files/1gzx.pdb): 61 ms
eval ERROR: java.security.AccessControlException: access denied
(java.net.SocketPermission www.rcsb.org:80 connect,resolve)
----line 1 command 1 of file null:
load >> "http://www.rcsb.org/pdb/files/1gzx.pdb"; <<
When the page is loaded from a webserver, the applet is unable to
load any local file, as well as remote files coming from elsewhere
than the webserver :
FileManager.openFile(''file:////Users/paul/Desktop/
ac.pdb'') //''file:////Users/paul/Desktop/ac.pdb''
FileManager opening http://ordinateur-de-judith-ciosi.local/~paul/
JMolUSc/''file:////Users/paul/Desktop/ac.pdb''
file ERROR: http://ordinateur-de-judith-ciosi.local/~paul/
JMolUSc/''file:////Users/paul/Desktop/ac.pdb''
java.io.FileNotFoundException: http://ordinateur-de-judith-
ciosi.local/~paul/JMolUSc/''file:////Users/paul/Desktop/ac.pdb''
openFile(''file:////Users/paul/Desktop/ac.pdb''): 3 ms
eval ERROR: java.io.FileNotFoundException: http://ordinateur-de-
judith-ciosi.local/~paul/JMolUSc/''file:////Users/paul/Desktop/
ac.pdb''
----line 1 command 1 of file null:
load >> "''file:////Users/paul/Desktop/ac.pdb''" <<
I searched the mailing list archive for this issue and found a one
year old thread, which stated that this behavior is linked to the
inability to accept loading external files when the command is issued
by an unsigned javascript. A workaround is to reload the jmol applet
with the new file.
I would like to know if there is any other solution to make the
signed applet accept an external file ? I am also wondering at how
this problem has been dealt with in jmol protein explorer ?
Thanks in advance,
Paul
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Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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