I do wish I hadn't missed this one.... Sorry Daniel -- it went under my
radar. This is what we just fixed. Oy, April!
On Thu, Apr 8, 2010 at 9:42 AM, Daniel Lundin <daniel.lun...@molbio.su.se>wrote:
> Hi,
>
> I am using rotateSelected and translateSelected to superpose two protein
> molecules. My code works in recent 11.9 (currently, I'm using 11.9.17)
> versions of Jmol, but not in 12.0.RC3 nor .RC4.
>
> In 12.0.RC3 the below script fails silently, while in 12.0.RC4 I get an
> error message: "script-FEL: unrecognized command
> ----line 18 command 18 of
>
> file:///home/dl/projects/r2_evolution/structural_alignment/c.7.1.d/test.spt:
> >> rotateSelected << molecular {0.17656176 -0.4046893 0.745402
> 0.49942806}"
>
> ..and similar for translateSelected.
>
> Here's the script, which requires the 1l1l.pdb and 1xjj.pdb files in the
> same directory as the script:
>
> load 1l1l.pdb
> load append 1xjj.pdb
> frame *
> select *
> wireframe off
> cpk off
> select :A/1
> cartoon
> color group
> select :A/2
> cartoon
> color [x009999]
> # 1l1lA - 1xjjA
> r = [[ -0.43879509947, -0.88745464558, -0.14100749175 ],\
> [0.60164401412,-0.17359627068, -0.7796722485 ], [ 0.66744538425,\
> -0.42695267519, 0.61010496818 ]]
> rq = quaternion(r)
> t = { -54.380571529, 78.315030918, 80.097824409 }
> rotateSelected MOLECULAR @rq
> translateSelected @t
>
> /D
>
>
> --
> Daniel Lundin
>
> Department of Molecular Biology & Functional Genomics
> Arrhenius Laboratories for Natural Sciences
> Stockholm University, SE-106 91 Stockholm, Sweden
>
> tel. +46 (0)8 16 41 95, mobile: +46 (0)708 123 922, fax. +46 (0)8 16 64 88
>
> Email: daniel.lun...@molbio.su.se
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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