Dear Jmol team,
I am trying to make a figure of a molecule in which the bonds are colored
by a RGB scale according to the values read from a data file. I have done
something similar to this idea in the case of coloring atoms by the value
of partial charges:
x = load("charges.dat")
set propertydatafield 1
data "property_partialcharge @x"
{y>0}.label = load("charges.dat").split()
color property_partialcharge "bwr" range 0.7 1.3
write IMAGE PNG "color_by_charges.png"
It worked pretty well in this case but I couldn't find a way to update my
script for the case of coloring bonds. I tried to use the "
property_bond_lengths" but it seems to have the same effect as in the
partialcharge. Is there a way to do such color maps of bonds in jmol? If
yes, could somebody, please, give me a suggestion of how to do that?
I will be grateful for any help you can provide.
All the best,
Max Pinheiro Jr
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