Motherboards that play nicely with Linux

[Aidan Gauland]

Hello,

Are there any motherboard manufacturers who usually make motherboards that 
work well with Linux, or any that Linux users should avoid?

Also, should I just disregard notices like this one?
"Due to different Linux support condition provided by chipset vendors, please 
download Linux driver from chipset vendors' website or 3rd party website."

Thanks,
Aidan