Yose, By default, PyMOL guesses connectivity based on proximity, based on the empirical observation that two atoms of a given radius will not be generally closer than a certain distance unless they are bonded. Cheers, Warren _____
From: [email protected] [mailto:[email protected]] On Behalf Of Yose Widjaja Sent: Friday, September 12, 2008 7:33 AM To: [email protected] Subject: [PyMOL] ATOM and CONECT.. Hello, I was going through the PDB file specification.. there are some PDB files that doesn't have CONECT records, but pymol still manages to draw them connected together (just from the ATOM records). How is this done? I tried searching on this, but since I don't really come from bio/chemistry background, it's a bit hard to get them.. Thanks
