I see, so that's something like using the Van der Waals radius, etc? I guess this kind of stuff does need chemistry background (tried researching on that).
Cheers On Sat, Sep 13, 2008 at 4:13 AM, DeLano Scientific <[email protected]>wrote: > Yose, > > By default, PyMOL guesses connectivity based on proximity, based on the > empirical observation that two atoms of a given radius will not be > generally closer than a certain distance unless they are bonded. > > Cheers, > Warren > > ------------------------------ > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Yose Widjaja > *Sent:* Friday, September 12, 2008 7:33 AM > *To:* [email protected] > *Subject:* [PyMOL] ATOM and CONECT.. > > Hello, > > I was going through the PDB file specification.. there are some PDB files > that doesn't have CONECT records, but pymol still manages to draw them > connected together (just from the ATOM records). How is this done? > > I tried searching on this, but since I don't really come from bio/chemistry > background, it's a bit hard to get them.. > > Thanks >
