Have a look on the earlier message on this.
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg11148.html
Troels Emtekær Linnet
2013/6/18 Chen Zhao <chenzhaoh...@gmail.com>
> Dear Pymol Users,
>
> I have been trying to configure APBS-1.4 plugin of pymol 1.6 on a Debian
> Wheezy machine. The initialization is successful, but when I hit "set
> grid", I got the error message below:
>
> *error: 1
> <type 'exceptions.UnboundLocalError'> Exception in Tk callback
> Function: <function <lambda> at 0x33a6938> (type: <type 'function'>)
> Args: ()
> Traceback (innermost last):
> File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line
> 1747, in __call__
> return apply(self.func, args)
> File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwDialog.py",
> line 153, in <lambda>
> command=lambda self=self, name=name: self._doCommand(name))
> File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwDialog.py",
> line 132, in _doCommand
> return command(name)
> File
> "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line
> 1075, in execute
> self.runPsize()
> File
> "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line
> 1096, in runPsize
> good = self.generatePqrFile()
> File
> "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line
> 1007, in generatePqrFile
> good = self._generatePdb2pqrPqrFile()
> File
> "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line
> 1615, in _generatePdb2pqrPqrFile
> if retval != 0:
> <type 'exceptions.UnboundLocalError'>: local variable 'retval' referenced
> before assignment*
>
> Also, although I specified the PATH of APBS and PDB2PQR in apbs_tools.py
> file, the APBS GUI in pymol is still unable to show the correct path of
> APBS and PDB2PQR.
>
> Thank you so much!
>
> Sincerely,
> Chen
>
>
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