Have you tried the "DSS" command? https://pymolwiki.org/index.php/Dss
------------------------------ *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay...@gmail.com / +91 8800412916 *CSIR-IGIB* <http://example.com/>New Delhi, India [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=signaturevirality11&;> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=signaturevirality11&;> 04/01/22, 04:38:43 pm On Thu, Dec 16, 2021 at 11:38 PM Bonsor, Daniel (NIH/NCI) [C] via PyMOL-users <pymol-users@lists.sourceforge.net> wrote: > Dear All, > > > > My latest structure has several 3-10 helices present, however, a few of > them in cartoon form shows the starting residue of the helix to be > distorted/twisted. > > > > The structure is 2.2Ang and I can clearly see the position of the amide > bond and the direction of carbonyl, but I cannot stop the twisting of the > cartoon. > > > > I have tried altering that residue ss to a loop which “works” (as in the > problem goes away) but I really wish to show the full helix. I have also > run DSSPtoPDB and force it not to recognize the 3-10 helices as helices but > in cartoon form you can see they are helices. > > > > Do anyone have suggestions or a way to force it to be a helix? > > [image: A close up of a toy Description automatically generated with low > confidence] > > Thanks, > > > > Daniel > > > > > > [image: Text Frederick National Laboratory on a teal background] > > > > [image: LinkedIn icon] > <https://www.linkedin.com/company/frederick-national-laboratory-for-cancer-research/> > [image: Twitter icon] <https://twitter.com/FredNatLab> [image: Facebook > icon] <https://www.facebook.com/FredNatLab> [image: Instagram icon] > <https://www.instagram.com/frednatlab/> > > *Daniel A Bonsor PhD | Scientist I* > > RAS Structural Biology > > > > > > [image: Phone icon] > > office: 301-846-5134 / cell: 443-983-2930 > > > > [image: Email icon] > > daniel.bon...@nih.gov *[Contractor]* > > > > [image: Location icon] > > Post Office Box B, Frederick, MD 21702 > > > > [image: Link icon] > > frederick.cancer.gov > > > > > > The Frederick National Laboratory for Cancer Research is operated by > Leidos Biomedical Research, Inc. for the National Cancer Institute. > > -- > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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