Perfect! Exactly the information I needed. Thanks,
Morgan On Wed, Aug 10, 2011 at 4:15 PM, David Bapst <dwba...@uchicago.edu> wrote: > Morgan- > The node labels from ace() are the ID numbers used in the edge matrix > (you can see that with tree$edge, where 'tree' is your phylogeny > object), and the are numbered from (Ntip(tree)+1) to > (Ntip(tree)+Ntip(tree)-1). Thus, to give your tree the IDs from the > edge matrix as node labels, just do: > > tree$node.label<-Ntip(tree)+(1:(Ntip(tree)-1)) > plot.phylo (tree,show.node.label=T) #and we can see > the node labels! > > I hope that helps. > -Dave > > > On Wed, Aug 10, 2011 at 1:49 PM, Morgan Langille > <morgan.g.i.langi...@gmail.com> wrote: >> I have a tree with no node labels and I am running ACE many times. I >> would like to somehow get ACE data, specifically "reconstruction$ace" >> out of R. I can create node labels for my tree using function >> makenodelabel, but these don't correspond to the node labels within >> the phylo data structure that is used as the names within >> "reconstruction$ace". I see two choices: >> >> Is there a way to easily set the node labels for my tree to correspond >> to the internal R phylo object node labels? >> >> OR >> >> Is there a way to map the internal phylo node labels to the node >> labels on the tree? >> >> >> Any help is greatly appreciated! >> >> >> Morgan Langille >> http://morganlangille.com >> >> _______________________________________________ >> R-sig-phylo mailing list >> R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> > > > > -- > David Bapst > Dept of Geophysical Sciences > University of Chicago > 5734 S. Ellis > Chicago, IL 60637 > http://home.uchicago.edu/~dwbapst/ > _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
