Hi all:
I am using the phylock package to read and plot a BEAST tree in R. I want to
remove outgroups from my plot, therefore I used the extract.clade2() from the
phylock package. But, when I try to plot the new phylogeny with the extracted
clade, R quits unexpectedly. I have tried to plot that clade using
extract.clade() from ape package and it works fine, the problem is that I cant
plot the HPDbars() command doing this way.
What I am doing is more or less like this:
Btree<- read.beast("BEASToutput_logclock.tre)
tree <- extract.clade2(Btree,127)
plot.phylo(tree, label.offset=0.5, cex=0.7) ## This command cause R to quit
unexpectedly, but only after the extract.clade2()
Has anyone experienced this problem before? What I need is really simple: plot
one clade extracted from a BEAST phylogeny with the height_95%_HPD. Suggestions?
Thanks,
----------------------
Mariana Mira Vasconcellos
marian...@utexas.edu
PhD candidate
Ecology, Evolution & Behavior
Integrative Biology
The University of Texas at Austin
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
