Hi Vojtěch,
You can also have a look at pegas: it includes a vignette detailing how
to read allelic/genotypic data files and converting from/to adegenet:
library(pegas)
vignette("ReadingFiles")
Most functions in pegas will accept any level of ploidy.
HTH
Emmanuel
Le 30/05/2014 05:34, Jombart, Thibaut a écrit :
Hi there,
yes, adegenet handles any (constant) ploidy for most purposes. For input
formats etc. please see the tutorial on basics, section 'documents' on:
http://adegenet.r-forge.r-project.org/
Please feel free to use the adegenet forum for adegenet-related questions.
Cheers
Thibaut
________________________________________
From: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] on
behalf of Gilles Benjamin Leduc [g...@hi.is]
Sent: 29 May 2014 17:12
To: Vojtěch Zeisek
Cc: mailinglist R
Subject: Re: [R-sig-phylo] Triploid microsatellites?
Hi,
Yes it is possible in R, there is a package created for related purposes:
poppr or something like that… The dev version on github should be preferred.
I have seen several R work with polyploids and microsatelites, unfortunately… I
work with ALFP :p
Benjamin
Le Jeudi 29 Mai 2014 13:40 GMT, Vojtěch Zeisek <vo...@trapa.cz> a écrit:
Hello,
I wonder if it is possible to handle triploid microsatellite (yes, all
individuals are regular 3n) data in adegenet and another R packages. And if
so, how to enter the data. Any experiences and/or Ideas are very welcomed. :-)
Structure and BAPS are working well.
Yours sincerely,
Vojtěch Zeisek
--
Vojtěch Zeisek
http://trapa.cz/en/
Department of Botany, Faculty of Science
Charles University in Prague
Benátská 2, Prague, 12801, CZ
http://botany.natur.cuni.cz/en/
Institute of Botany, Academy of Science
Zámek 1, Průhonice, 25243, CZ
http://www.ibot.cas.cz/en/
Czech Republic
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