Hi Emmanuel, agree looks cool. When do you want to push the new version to CRAN? Newest phangorn development has now a as.AAbin.phyDat function and dist.ml has transition rate matrices for amino acids. Does anybody know how to set .travis.yaml on github to install ape from Emmanuel's repository instead of CRAN server? Cheers, Klaus
On Mon, Feb 22, 2016 at 5:37 AM, Thibaut Jombart <thibautjomb...@gmail.com> wrote: > Hi Emmanuel, > > this looks really cool - especially the new AAbin class. Looking forward to > playing with the new version! > > Best > Thibaut > > > -- > Dr Thibaut Jombart > Lecturer, Department of Infectious Disease Epidemiology > Imperial College London > https://sites.google.com/site/thibautjombart/ > https://github.com/thibautjombart > Twitter: @TeebzR <https://twitter.com/TeebzR> > > On 22 February 2016 at 09:16, Emmanuel Paradis <emmanuel.para...@ird.fr> > wrote: > > > Dear all, > > > > A new testing version of ape (3.4-0.3) is available. It includes three > > main new features: > > > > - A new data class, "AAbin", to store amino acid sequences; there are > > eleven new functions to generate and manipulate them including > translation > > from DNA. > > > > - The function checkAlignment does some diagnostics on a DNA alignment. > > > > - Some extra plotting functions built on ape's basic plotting functions > > (plot.phylo, nodelabels, phydataplot, ring) for a specific task. For the > > moment, there are two such functions: drawSupportOnEdges() and > > plotBreakLongEdges(). > > > > Information on the new functions can be found at: > > > > http://ape-package.ird.fr/NEWS > > > > And instructions on how to get and install the testing version here: > > > > http://ape-package.ird.fr/ape_installation.html#versions > > > > A Windows version is available. > > > > Best, > > > > Emmanuel > > > > _______________________________________________ > > R-sig-phylo mailing list - R-sig-phylo@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > > Searchable archive at > > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > -- Klaus Schliep Postdoctoral Fellow Revell Lab, University of Massachusetts Boston [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
