Hi Franz, You should be able to use the multistate option
Manabu On 14 June 2016 at 10:21, mailbox Franz <f.k...@mailbox.org> wrote: > Hi Manabu, > > thanks for that! > I can see the discrete model allows 2 binaries. There is no implementation > of a 3 binaries model as a pendant to corDISC, I guess?! > > Cheers, > Franz > > > Am 14.06.2016 um 11:17 schrieb Manabu Sakamoto <manabu.sakam...@gmail.com > >: > > Hi Franz, > > It is implemented in BayesTraits ( > http://www.evolution.rdg.ac.uk/BayesTraits.html). > I know it's not R, and it's a command line based program, so might take a > while to get used to, but BayesTraits is really powerful (and it's > Bayesian!) > > thanks, > Manabu > > On 14 June 2016 at 09:58, mailbox Franz <f.k...@mailbox.org> wrote: > >> Hi everybody, >> >> does anyone know if the bayesian version of Pagels 94 Method of >> correlated binary traits is implemented in R somewhere? >> There is the corHMM package which implements a 3-state ML version of it, >> but I couldn’t find a Baysian version anywhere. >> >> So I search for a Bayesian version of a 2 or 3 binary state correlated >> evolution method (preferably in R). >> >> The Paper I refer to is: >> >> http://www.ncbi.nlm.nih.gov/pubmed/16685633 >> >> All the best, >> Franz >> >> _______________________________________________ >> R-sig-phylo mailing list - R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at >> http://www.mail-archive.com/r-sig-phylo@r-project.org/ > > > > > -- > Manabu Sakamoto, PhD > manabu.sakam...@gmail.com > > > -- Manabu Sakamoto, PhD manabu.sakam...@gmail.com [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
