On 14 Dec 2016, at 15:33, Joseph W. Brown <josep...@umich.edu> wrote:
> I wonder if reading in a Nexus file with a translation table bypasses this
If I try read.nexus with a TAXLABELS entry, it still (oddly) results in a
multiPhylo structure of the same size as before running .compressTipLabel.
However, when I then do .compressTipLabel() it only takes a moment. My guess is
this is something to do with skipping the renumbering process. It would be nice
to have the option in both read.nexus and read.tree, so that I don’t have to
allocate memory (many GB in my case) for the intermediate step.
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