I got it! And it looks lovely. Thanks so much Liam and Cecile. Best,
Amanda ________________________________ From: R-sig-phylo <r-sig-phylo-boun...@r-project.org> on behalf of Liam Revell <liam.rev...@umb.edu> Sent: Saturday, March 9, 2019 9:42 AM To: Cecile Ane; r-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] using color function in phylomorphospace Cecile makes a good point. In this case if your tree has 36 edges all you would have to do is change your code such that: phylomorphospace(...,control=list(col.edge=setNames(1:36,tree$edge[,2]))) and you'll have the colors that correspond to the numeric vector 1:36. (These are just the 8 colors of palette() repeated until you get to 36.) For the purposes of painting different clades with different colors I still recommend paintSubTree. All the best, Liam Liam J. Revell Associate Professor, University of Massachusetts Boston Profesor Asistente, Universidad Cat�lica de la Ssma Concepci�n web: http://faculty.umb.edu/liam.revell/, http://www.phytools.org Academic Director UMass Boston Chile Abroad (starting 2019): https://www.umb.edu/academics/caps/international/biology_chile On 3/9/2019 12:27 PM, Cecile Ane wrote: > colors can be numeric. for example: > plot(1:36, 1:36, col=1:36) > C�cile > >> On Mar 8, 2019, at 8:42 PM, Liam Revell <liam.rev...@umb.edu >> <mailto:liam.rev...@umb.edu>> wrote: >> >> Dear Amanda. >> >> I'm a little confused by your code. If you want to use >> control=list(col.edge) you need to set col.edge to a vector of colors, >> but in your example col.edge is a numeric vector from 1 to 36. > _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]]
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