Hi all, I realise this might not be strictly a phylogeny-related issue, but it might be as it relates to geiger and in any case the CRAN Core Team have left me at an impasse trying to get an update to windex through to CRAN (just repeating the error message then ignoring messages asking for clarification or advice on fixing it). Hopefully it's relevant enough to this list to be OK.
When trying to submit an update to the package, all Debian checks are coming back fine, but there is one note in the Windows checks that is stopping the process. The note reads:- "windex: no visible global function definition for 'rescale' Undefined global functions or variables: rescale" However, geiger (the package which contains rescale) is listed as a dependency in the DESCRIPTION and is imported in the NAMESPACE, so rescale should definitely be there. Combined with the lack of issue flagged by Debian checks (which presumably would also check basic things like 'do the functions exist') and the fact that this issue hasn't occurred in previous version submitted to CRAN (nothing has changed with respect to the use of the rescale function), I am at a loss. In case it helps, the contents of the DESCRIPTION and NAMESPACE files are as follows:- DESCRIPTION file: Package: windex Type: Package Title: Analysing Convergent Evolution using the Wheatsheaf Index Version: 2.0.4 Date: 2023-02-23 Author: Kevin Arbuckle and Amanda Minter Maintainer: Kevin Arbuckle kevin.arbuc...@swansea.ac.uk<mailto:kevin.arbuc...@swansea.ac.uk> Description: Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other unrelated but perhaps useful functions. License: GPL-2 Depends: phytools, geiger (>= 2.0), ape (>= 4.0), phangorn, scatterplot3d, utils, methods, R (>= 3.0.0) Packaged: 2023-02-23 12:36:50 UTC; karbuckle NAMESPACE file: exportPattern("^[^\\.]") import(ape,utils,scatterplot3d) importFrom("graphics", "abline", "hist", "legend", "points", "arrows", "plot","text","polygon") importFrom("stats", "dist", "quantile", "sd", "var", "AIC", "BIC", "logLik", "na.omit", "pchisq", "shapiro.test","model.frame","density") importFrom("methods", "is") importFrom("phytools", "findMRCA", "nodeHeights") importFrom("geiger", "rescale", "ratematrix", "sim.char") importFrom("phangorn", "CI", "as.phyDat", "Children", "Descendants") Any advice on how to resolve this would be welcome. Note that originally I had imported geiger (and phangorn) as import rather than importFrom in the NAMESPACE, but the current version was an attempt to resolve the issue and didn't work in that the same note is coming back every time. Best wishes, Kev Dr Kevin Arbuckle Athro Cyswllt (Darllenydd) mewn Biowyddorau (Bioleg Esblygiadol) / Associate Professor (Reader) in Biosciences (Evolutionary Biology) Adran Biowyddorau / Department of Biosciences Cyfadran Gwyddoniaeth a Pheirianneg / Faculty of Science and Engineering Prifysgol Abertawe / Swansea University Abertawe / Swansea SA2 8PP UK Rhowch wybod i ni os hoffech dderbyn eich gohebiaeth yn Gymraeg. Rydym yn croesawu gohebiaeth yn Gymraeg neu yn Saesneg. Ni fydd gohebu yn Gymraeg yn arwain at oedi. [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
