Dear Leonardo. This is covered in Chapter 7, pp. 215-219 of my book with Luke Harmon (https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r), but don't worry -- I also just posted a solution on my blog: http://blog.phytools.org/2023/10/computing-hpd-interval-on-evolutionary.html.
I hope this helps you figure out what you need to do! All the best, Liam Liam J. Revell Professor of Biology, University of Massachusetts Boston Web: http://faculty.umb.edu/liam.revell/ Book: Phylogenetic Comparative Methods in R <https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r> (/Princeton University Press/, 2022) On 10/30/2023 8:11 PM, Leonardo Matheus Servino wrote: > [You don't often get email fromleonardomserv...@gmail.com. Learn why this is > important athttps://aka.ms/LearnAboutSenderIdentification ] > > CAUTION: EXTERNAL SENDER > > Dear group, > > I am performing analyses using threshBayes from the phytools package. I was > wondering if someone has ever extracted the highest posterior density > intervals (HPD) values using this function. How could I make this? > > Thanks in advance > > -- > Leonardo Matheus Servino > Pós-graduação em Ecologia > > Departamento de Ecologia > Universidade de São Paulo > Rua do Matão, Trav. 14, n˚ 101 > Cid. Universitária - São Paulo, SP > 05508-090 > Brasil > > *Lattes<http://lattes.cnpq.br/3993528079964952> - **ResearchGate > <https://www.researchgate.net/profile/Leonardo_Servino> - ORCID > <https://orcid.org/0000-0002-6772-376X> - LinkedIn > <https://www.linkedin.com/in/leonardo-matheus-servino-8379ba1b2>* > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list -R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive athttp://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
