Dear Liam, Thank you very much for your reply!
Cheers Em ter., 31 de out. de 2023 às 16:49, Liam J. Revell <liam.rev...@umb.edu> escreveu: > Dear Leonardo. > > This is covered in Chapter 7, pp. 215-219 of my book with Luke Harmon ( > https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r), > but don't worry -- I also just posted a solution on my blog: > http://blog.phytools.org/2023/10/computing-hpd-interval-on-evolutionary.html > . > > I hope this helps you figure out what you need to do! > > All the best, Liam > Liam J. Revell > Professor of Biology, University of Massachusetts Boston > Web: http://faculty.umb.edu/liam.revell/ > Book: Phylogenetic Comparative Methods in R > <https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r> > (*Princeton University Press*, 2022) > > > On 10/30/2023 8:11 PM, Leonardo Matheus Servino wrote: > > [You don't often get email from leonardomserv...@gmail.com. Learn why this is > important at https://aka.ms/LearnAboutSenderIdentification ] > > CAUTION: EXTERNAL SENDER > > Dear group, > > I am performing analyses using threshBayes from the phytools package. I was > wondering if someone has ever extracted the highest posterior density > intervals (HPD) values using this function. How could I make this? > > Thanks in advance > > -- > Leonardo Matheus Servino > Pós-graduação em Ecologia > > Departamento de Ecologia > Universidade de São Paulo > Rua do Matão, Trav. 14, n˚ 101 > Cid. Universitária - São Paulo, SP > 05508-090 > Brasil > > *Lattes > <https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Flattes.cnpq.br%2F3993528079964952&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=gkOMlDOR8sk8LYyg5B4z3PeSbUQlpXlRxaVhZ7HJuvM%3D&reserved=0> > <http://lattes.cnpq.br/3993528079964952> - > **ResearchGate<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.researchgate.net%2Fprofile%2FLeonardo_Servino&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=Ehkb%2FdPbTxqoC%2Ffi1u1BtuAPzcIPeoUjuF8vu%2BKH6fU%3D&reserved=0> > <https://www.researchgate.net/profile/Leonardo_Servino> - > ORCID<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Forcid.org%2F0000-0002-6772-376X&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=uofMSlhVupqONEvq70YkAVntQtDyfK4kOyjEGPV2adw%3D&reserved=0> > <https://orcid.org/0000-0002-6772-376X> - > LinkedIn<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.linkedin.com%2Fin%2Fleonardo-matheus-servino-8379ba1b2&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=va5J8vLSGRtT1xBM%2ByVpf0lJFHbbQXkydmmQNFIz20s%3D&reserved=0> > <https://www.linkedin.com/in/leonardo-matheus-servino-8379ba1b2>* > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - > R-sig-phylo@r-project.orghttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-phylo&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=49mNwnpox9tXO4ESN21VqbochbAT2ZEucXML1w9E2vs%3D&reserved=0 > <https://stat.ethz.ch/mailman/listinfo/r-sig-phylo> > Searchable archive at > https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.mail-archive.com%2Fr-sig-phylo%40r-project.org%2F&data=05%7C01%7Cliam.revell%40umb.edu%7C721dc1700ef9430e33c508dbd9a60cf5%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C638343079448809813%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=9c6BW5Unae3KqcNs0VkU6v7afW8KwDT%2BM%2F%2FPmACnIY0%3D&reserved=0 > <http://www.mail-archive.com/r-sig-phylo@r-project.org/> > > -- Leonardo Matheus Servino Pós-graduação em Ecologia Departamento de Ecologia Universidade de São Paulo Rua do Matão, Trav. 14, n˚ 101 Cid. Universitária - São Paulo, SP 05508-090 Brasil *Lattes <http://lattes.cnpq.br/3993528079964952> - **ResearchGate <https://www.researchgate.net/profile/Leonardo_Servino> - ORCID <https://orcid.org/0000-0002-6772-376X> - LinkedIn <https://www.linkedin.com/in/leonardo-matheus-servino-8379ba1b2>* [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
