The system boost? You're talking about libboost?
2018-05-16 14:54 GMT+02:00 Greg Landrum <greg.land...@gmail.com>:
> cmake is finding boost v1.67, not the system boost.
>
>
> On Wed, May 16, 2018 at 2:34 PM alb greg <agparis7dide...@gmail.com>
> wrote:
>
>> Ubuntu 16.04
>>
>> *CmakeMessages :*
>>
>> -- The C compiler identification is GNU 5.4.0
>> -- The CXX compiler identification is GNU 5.4.0
>> -- Check for working C compiler: /usr/bin/cc
>> -- Check for working C compiler: /usr/bin/cc -- works
>> -- Detecting C compiler ABI info
>> -- Detecting C compiler ABI info - done
>> -- Detecting C compile features
>> -- Detecting C compile features - done
>> -- Check for working CXX compiler: /usr/bin/c++
>> -- Check for working CXX compiler: /usr/bin/c++ -- works
>> -- Detecting CXX compiler ABI info
>> -- Detecting CXX compiler ABI info - done
>> -- Detecting CXX compile features
>> -- Detecting CXX compile features - done
>> -- Check if the system is big endian
>> -- Searching 16 bit integer
>> -- Looking for sys/types.h
>> -- Looking for sys/types.h - found
>> -- Looking for stdint.h
>> -- Looking for stdint.h - found
>> -- Looking for stddef.h
>> -- Looking for stddef.h - found
>> -- Check size of unsigned short
>> -- Check size of unsigned short - done
>> -- Using unsigned short
>> -- Check if the system is big endian - little endian
>> -- Found PythonInterp: /usr/bin/python3 (found version "3.5.2")
>> -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so (found
>> version "3.5.2")
>> -- Found Eigen3: /usr/include/eigen3 (Required is at least version
>> "2.91.0")
>> -- Looking for pthread.h
>> -- Looking for pthread.h - found
>> -- Looking for pthread_create
>> -- Looking for pthread_create - not found
>> -- Looking for pthread_create in pthreads
>> -- Looking for pthread_create in pthreads - not found
>> -- Looking for pthread_create in pthread
>> -- Looking for pthread_create in pthread - found
>> -- Found Threads: TRUE
>> -- Boost version: 1.67.0
>> -- Found the following Boost libraries:
>> -- serialization
>> == Done updating pains files
>> -- Configuring done
>> -- Generating done
>> -- Build files have been written to: /home/user/src/rdkit/rdkit/build
>>
>> *CmakeErrors :*
>>
>> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
>> (message):
>> Imported targets not available for Boost version 106700
>> Call Stack (most recent call first):
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_
>> DEPENDENCIES)
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
>> (_Boost_MISSING_DEPENDENCIES)
>> CMakeLists.txt:194 (find_package)
>>
>>
>> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
>> (message):
>> Imported targets not available for Boost version 106700
>> Call Stack (most recent call first):
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_
>> DEPENDENCIES)
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
>> (_Boost_MISSING_DEPENDENCIES)
>> CMakeLists.txt:194 (find_package)
>>
>>
>> PYTHON Py_ENABLE_SHARED: 1
>> PYTHON USING LINK LINE: -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
>> -Wl,-Bsymbolic-functions -Wl,-z,relro
>> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
>> (message):
>> Imported targets not available for Boost version 106700
>> Call Stack (most recent call first):
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_
>> DEPENDENCIES)
>> /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
>> (_Boost_MISSING_DEPENDENCIES)
>> CMakeLists.txt:303 (find_package)
>>
>>
>> == Using strict rotor definition
>> -- Found MAEParser source in /home/labbe/src/rdkit/rdkit/
>> External/CoordGen/maeparser
>> -- Found coordgenlibs source in /home/labbe/src/rdkit/rdkit/
>> External/CoordGen/coordgenlibs
>> == Updating Filters.cpp from pains file
>> -- Found RapidJSON source in /home/labbe/src/rdkit/rdkit/External
>>
>>
>>
>>
>>
>> 2018-05-16 13:05 GMT+02:00 Greg Landrum <greg.land...@gmail.com>:
>>
>>> On Wed, May 16, 2018 at 12:53 PM alb greg <agparis7dide...@gmail.com>
>>> wrote:
>>>
>>>> I followed the instructions in this dockerfile but it failed with an
>>>> error 2 during "make -j3 .. install" command.
>>>>
>>>>
>>> In order to be able to help I need a bit more information than that.
>>> What was the error you encountered? What version of Ubuntu? etc.
>>>
>>> -greg
>>>
>>
>>
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