Hi Greg, exactly that was the case. RDKit nicely installs now! Cheers, Markus
On 11/15/2010 10:05 AM, Greg Landrum wrote: > HI Markus, > > On Mon, Nov 15, 2010 at 9:51 AM, Markus Kossner > <m.koss...@googlemail.com> wrote: >> Hi Greg, >> I have tried to install the latest RDKit on a freshly installed Ubuntu >> 10.10. >> After installing python-dev, sqlite3, numpy, bison, flex AND THE BOOST >> LIBRARIES VIA APT (boost 1.42), I additionally installed boost 1.4.2 in >> /opt/boost_1_42_0. >> During the cmake step flex and bison were found in /usr/lib. Several >> Warnings were issued during the "cmake -DBOOST_ROOT=/opt/boost_1_42_0 >> .." -step. >> Obviously the system built boost installation was erroneously used (?is >> this the problem if the versions of boost are the same?). > > Should be no problem. In fact, if the system boost is the version you > want, then you shouldn't need to install your own at all. > >> When doing the "make" the following error occurs: >> >> -----snip---------------- >> [ 34%] Building CXX object >> Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o >> [ 34%] Building CXX object >> Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o >> Linking CXX shared library ../../lib/libGraphMol.so >> [ 34%] Built target GraphMol >> [ 34%] [FLEX][SmartsL] Building scanner with flex /usr/bin/flex version >> 2.5.4 >> "smarts.ll", line 1: unrecognized %option: reentrant >> "smarts.ll", line 2: unrecognized %option: bison-bridge >> make[2]: *** [../Code/GraphMol/SmilesParse/lex.yysmarts.cpp] Error 1 >> make[1]: *** [Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all] >> Error 2 >> make: *** [all] Error 2 >> -----snip---------------- > > This is almost definitely due to an older version of flex. There's > some info here: > http://www.mail-archive.com/rdkit-discuss@lists.sourceforge.net/msg01079.html > > From what I can tell about Ubuntu 10.10, you should have a more recent > version of flex available... did you install the flex-old package? > > Best Regards, > -greg ------------------------------------------------------------------------------ Centralized Desktop Delivery: Dell and VMware Reference Architecture Simplifying enterprise desktop deployment and management using Dell EqualLogic storage and VMware View: A highly scalable, end-to-end client virtualization framework. Read more! http://p.sf.net/sfu/dell-eql-dev2dev _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
