Hi Jan,
Many thanks for the reply.
Yes, I used apt-get and the default repositories to install postgresql on a
Ubuntu 12.04.
I'll follow your guidelines and the new repos tomorrow and I'll let you
know.
Many thanks again,
George
On 29 May 2012 23:15, Jan Holst Jensen <j...@biochemfusion.com> wrote:
> On 2012-05-29 17:45, George Papadatos wrote:
>
> Hi RDKitters,
>
> Today I tried to install the RDKit and cartridge to a brand new Ubuntu
> 12.04 32-bit running on a Virtual Box.
>
> [...]
>
> Then when I tried to install the extension:
> georgep@george-VB:~$ psql -c 'CREATE EXTENSION rdkit' gpdb
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> connection to server was lost
>
> or even:
> georgep@george-VB:~/local/rdkit/rdkit_trunk/Code/PgSQL/rdkit$ psql gpdb
> psql (9.1.3)
> Type "help" for help.
>
> gpdb=# create extension "rdkit";
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5
> The connection to the server was lost. Attempting reset: Succeeded.
> gpdb=# show rdkit.tanimoto_threshold;
> ERROR: unrecognized configuration parameter "rdkit.tanimoto_threshold"
>
>
> Any ideas would be much appreciated!
>
>
> Hi George,
>
> Sounds exactly like the behavior I described in this thread:
>
>
> http://sourceforge.net/mailarchive/forum.php?thread_name=CAD4fdRRHdpqDRCWd5AjEzDWJia5WM6zsq%3DosvVmb%3DYHe%3DpmR7A%40mail.gmail.com&forum_name=rdkit-discuss
>
> My issue seemed to be related to the OpenSCG version of PostgreSQL and for
> my purposes the issue was solved by using Martin Pitt's postgres packages
> instead. However, on one machine, a Linux Mint box, I never got it working.
> Are you using all plain vanilla packages from Ubuntu 12.04 ?
>
> Cheers
> -- Jan
>
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Rdkit-discuss mailing list
Rdkit-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
