Hi Tim,
could you please run a pwd in your build directory? Also, could you try
deleting CMakeCache.txt and re-running cmake?
With "subdirectory" I was asking whether your build directory was a
subdirectory of the RDKit root dir or a subdirectory of gmwrapper,
because I get that error if I try to run your command from
rdkit/Code/JavaWrappers/gmwrapper/build rather than from rdkit/build, as
in that case the main CMakeLists.txt file is not sourced.
Cheers,
p.
On 28/05/2020 17:01, Tim Dudgeon wrote:
well, I am running it from a subdirectory - the build subdirectory
which is where it has always been run from.
e.g.
mkdir build
cd build
cmake -DPYTHON_EXECUTABLE=/usr/bin/python3
-DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON
-DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_SWIG_WRAPPERS=ON ..
Tim
On Thu, May 28, 2020 at 4:46 PM Paolo Tosco
<paolo.tosco.m...@gmail.com <mailto:paolo.tosco.m...@gmail.com>> wrote:
Hi Tim,
downloadAndCheckMD5 is a function defined in
Code/cmake/Modules/RDKitUtils.cmake, which is included by the main
CMakeLists.txt file and then is available to all children
CMakeLists.txt files.
From the line number where the error occurs
$ grep -n downloadAndCheckMD5 `find . -name CMakeLists.txt`
./Code/JavaWrappers/gmwrapper/CMakeLists.txt:21:
downloadAndCheckMD5(${JUNIT_URL} "${RDKit_JavaLibDir}/junit.jar"
${JUNIT_MD5SUM})
it looks like you might be running cmake in a subdirectory rather
than in the RDKit root directory.
HTH, cheers
p.
On 28/05/2020 16:28, Tim Dudgeon wrote:
I'm not able to build form source (master branch) from a new
machine I've recently set up (Ubuntu 20.04).
$ cmake -DPYTHON_EXECUTABLE=/usr/bin/python3
-DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON
-DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_SWIG_WRAPPERS=ON ..
CMake Error at CMakeLists.txt:21 (downloadAndCheckMD5):
Unknown CMake command "downloadAndCheckMD5".
-- Configuring incomplete, errors occurred!
See also
"/home/timbo/github/rdkit/rdkit_2020_03/CMakeFiles/CMakeOutput.log".
$ cmake --version
cmake version 3.16.3
Has anything changed with cmake recently?
Tim
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