Hi,
I'm trying to install rpy2 on a Mac running Mac OS 10.6.4. The Mac has R
version 2.11.1, Python 2.6.2, and gcc version 4.2.1.
When I try to install rpy2 (version 2.1.3), I get the following error
message:
python setup.py install
running install
running build
running build_py
running build_ext
building 'rpy2.rinterface.rinterface' extension
gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk
-fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3
-DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1
-DRIF_HAS_RSIGHAND=1 -Irpy/rinterface
-I/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -c
rpy/rinterface/rinterface.c -o
build/temp.macosx-10.3-fat-2.6/rpy/rinterface/rinterface.o
-F/Library/Frameworks/R.framework/.. -framework R
-L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas
In file included from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/unicodeobject.h:4,
from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:85,
from rpy/rinterface/rinterface.c:55:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/stdarg.h:4:25: error: stdarg.h:
No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/Rh:31,
from rpy/rinterface/rinterface.c:61:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/float.h:8:24: error: float.h:
No such file or directory
In file included from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/unicodeobject.h:4,
from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:85,
from rpy/rinterface/rinterface.c:55:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/stdarg.h:4:25: error: stdarg.h:
No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/Rh:31,
from rpy/rinterface/rinterface.c:61:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/float.h:8:24: error: float.h:
No such file or directory
lipo: can't figure out the architecture type of:
/var/folders/rB/rBpMjOcPHy4U9XEiefEwiU+++TM/-Tmp-//cc7cmLKe.out
error: command 'gcc' failed with exit status 1
After some googling, I see that others have gotten the same error, but I
can't figure out whether it's my version of gcc, Python, or R that is
causing the problem (the problem seemed to happen to other people with a
variety of combinations of versions). Does anyone have any ideas of what I
can try?
Thanks so much in advance!
-David
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