[base] upgrading BASE without restarting tomcat

2008-04-02 Thread Bob MacCallum 

I just opened a feature suggestion ticket on the subject of being able to
upgrade base without restarting tomcat.  Currently it seems this is not
possible, at least with my skills and knowledge.  The official base guidelines
are to restart tomcat.

http://base.thep.lu.se/ticket/971

Maybe you know better?  Any nuggets of wisdom gladly received on the ticket
page or mailing list.

cheers,
Bob.

-- 
Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups |
Division of Cell and Molecular Biology | Imperial College London |
Phone +442075941945 | Email [EMAIL PROTECTED]

-
Check out the new SourceForge.net Marketplace.
It's the best place to buy or sell services for
just about anything Open Source.
http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
___
The BASE general discussion mailing list
basedb-users@lists.sourceforge.net
unsubscribe: send a mail with subject unsubscribe to
[EMAIL PROTECTED]

Re: [base] upgrading BASE without restarting tomcat

2008-04-02 Thread Nicklas Nordborg 
Bob MacCallum wrote:
 I just opened a feature suggestion ticket on the subject of being able to
 upgrade base without restarting tomcat.  Currently it seems this is not
 possible, at least with my skills and knowledge.  The official base guidelines
 are to restart tomcat.
 
 http://base.thep.lu.se/ticket/971
 
 Maybe you know better?  Any nuggets of wisdom gladly received on the ticket
 page or mailing list.

We have also tested the Tomcat manager (a long time ago) and found that 
it didn't work vere well and that is why our instructions say that you 
should restart Tomcat. I don't remember the exact error messages we had, 
but they were not always the same.

I think this is a problem with Tomcat. Maybe Tomcat 6 is better at this. 
I am closing your ticket as invalid.

/Nicklas

-
Check out the new SourceForge.net Marketplace.
It's the best place to buy or sell services for
just about anything Open Source.
http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
___
The BASE general discussion mailing list
basedb-users@lists.sourceforge.net
unsubscribe: send a mail with subject unsubscribe to
[EMAIL PROTECTED]

[base] login base2 error

2008-04-02 Thread Lisa Bishop 
Hi all,
I'm getting the following error when i'm trying to login. I haven't changed 
anything today but yesterday my raw data importer couldn't import a 70Mb raw 
data file. 
When i login with an incorrect password i get the appropriate error message and 
can click on more about this server to get the info, but when i log in with the 
correct password i get the following error message.

Version BASE 2.5.0 (build #4046; schema #46)
Web server  Apache Tomcat/5.5
Database Server MySQL 5.0.45-Debian_1ubuntu3.1-log





Error message   Timer already cancelled.
Stack trace 

java.lang.IllegalStateException
...at java.util.Timer.sched(Timer.java:354)
...at java.util.Timer.schedule(Timer.java:170)
...at Keyring.reload(Keyring.java:291)
...at Keyring.getAllPermissions(Keyring.java:856)
...at SessionControl.createLoginInfo(SessionControl.java:621)
...at SessionControl.login(SessionControl.java:406)
...at org.apache.jsp.login_jsp._jspService(login_jsp.java:71)
...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:98)

...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
...at 
org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:331)
...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:329)
...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:265)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
...at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269)
...at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
...at 
net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:72)
...at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
...at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
...at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
...at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
...at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
...at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
...at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
...at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:151)
...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
...at 
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
...at 
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
...at 
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
...at 
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
...at java.lang.Thread.run(Thread.java:595)

Does anybody know how to fix this?
Thanks in advance,
Lisa

 

-
Check out the new SourceForge.net Marketplace.
It's the best place to buy or sell services for
just about anything Open Source.
http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
___
The BASE general discussion mailing list
basedb-users@lists.sourceforge.net
unsubscribe: send a mail with subject unsubscribe to
[EMAIL PROTECTED]