Re: [ccp4bb] Eiger 16M detector in HKL2000

2017-12-19 Thread White, Mark 
Aidong,

I had a similar issue with the latest version of HKL2000. I had outsmarted 
myself by using symbolic links to the HKL executables. The HKL paths must be 
setup correctly for it to be able to find all the files necessary to read and 
decode the .h5 files.

Best regards
Mark

Sent from my iPhone

On Dec 19, 2017, at 2:23 AM, Aidong Han 
<a...@xmu.edu.cn<mailto:a...@xmu.edu.cn>> wrote:

Probably it is the reason. We are working on upgrading our HKL and getting a 
new license. I will let you know when our problem is solved. Thank you so much. 
 Aidong

On Dec 19, 2017, at 2:49 PM, Raghurama P Hegde 
<raghu_he...@live.com<mailto:raghu_he...@live.com>> wrote:

Dear Aidong,

As Dr. Förster has rightly pointed out you need to have the latest version of 
HKL2000 to work with the HDF5 files from the Eiger detectors and as you must be 
aware the HKL2000 license should include use of Eiger detectors. We have 
recently used HKL2000 to process data from MASSIF-3 beamline at ESRF which uses 
a EIGER X 4M detector but we had to upgrade to the latest version of HKL2000.

With regards,
Raghu


From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK]On Behalf Of Andreas 
Förster
Sent: Tuesday, December 19, 2017 11:47
To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK>
Subject: Re: [ccp4bb] Eiger 16M detector in HKL2000

Dear Aidong,

as I don't have access to HKL2000 myself, I can't tell you what might need to 
be done to have the software display EIGER X 16M images.  Wladek showed me that 
it was possible.  It might just be a question of getting the latest version.

There are alternatives to HKL-2000.

DIALS can process EIGER data with no questions asked 
(https://dials.github.io/<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdials.github.io%2F=02%7C01%7Cmawhite%40UTMB.EDU%7Cba1b45b08f604fa323ae08d546b9bc75%7C7bef256d85db4526a72d31aea2546852%7C0%7C0%7C636492685899979355=lB3aT%2Bir%2BK5prk0n2q8CBqm%2Fxrpskq2xYKXnBFkFbXk%3D=0>).
  It is free, open-source software.  DIALS exists as a powerful command line 
tool but can also be run through the xia2 pipeline 
(https://xia2.github.io/<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fxia2.github.io%2F=02%7C01%7Cmawhite%40UTMB.EDU%7Cba1b45b08f604fa323ae08d546b9bc75%7C7bef256d85db4526a72d31aea2546852%7C0%7C0%7C636492685899979355=lE2O25oE%2Fi7jdvP744i0uYeax3KxBuCYY%2BfPShcWeoA%3D=0>).
  Both are part of CCP4, but I'd recommend installing the latest DIALS nightly 
because development is rapid.  The developers respond quickly to questions.

XDS can process EIGER data 
(http://xds.mpimf-heidelberg.mpg.de/html_doc/XDS.html<https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fxds.mpimf-heidelberg.mpg.de%2Fhtml_doc%2FXDS.html=02%7C01%7Cmawhite%40UTMB.EDU%7Cba1b45b08f604fa323ae08d546b9bc75%7C7bef256d85db4526a72d31aea2546852%7C0%7C0%7C636492685899979355=O1VuKwyc3dBTOI3k51ogZTGaa%2FCsa7C%2F%2FhVJBbAMxc0%3D=0>).
  It is free to academic users.  To process data in HDF5 format (*.h5), make 
sure to download the neggia plugin 
(https://www.dectris.com/support/downloads/software/neggia<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.dectris.com%2Fsupport%2Fdownloads%2Fsoftware%2Fneggia=02%7C01%7Cmawhite%40UTMB.EDU%7Cba1b45b08f604fa323ae08d546b9bc75%7C7bef256d85db4526a72d31aea2546852%7C0%7C0%7C636492685899979355=W7bRF%2FoM2s4DcoOhSgdmpK7YbCwjvA2ymVNR7ewXJWI%3D=0>,
 free, but registration required) and adjust the LIB= parameter to point to 
where the plugin is saved.  XDS is a command line tool, but several GUIs exist.

Please give DIALS or XDS a try and tell me how you get along.  If you continue 
to encounter problems, let me and the beamline staff at SSRF know.

All best.



Andreas



On Tue, Dec 19, 2017 at 6:48 AM, Aidong Han 
<a...@xmu.edu.cn<mailto:a...@xmu.edu.cn>> wrote:
Hi All,

We have recently collected several data sets in the Shanghai synchrotron 
facility with a newly installed Eiger 16M. However, we are not able to process 
these data using our home HKL2000 package. Even though we can easily add this 
detector in, we can not display images. I believe ours has not been properly 
set up. While we are still waiting for a response from HKL2000 administration 
managers (it has been a few days), I wonder whether someone can provide me your 
solution since this detector has been in market for more than a year. Thank you 
for your help.

Sincerely,

Aidong

Re: [ccp4bb] Eiger 16M detector in HKL2000

2017-12-19 Thread Aidong Han 
Probably it is the reason. We are working on upgrading our HKL and getting a 
new license. I will let you know when our problem is solved. Thank you so much. 
 Aidong

On Dec 19, 2017, at 2:49 PM, Raghurama P Hegde <raghu_he...@live.com> wrote:

> Dear Aidong,
>  
> As Dr. Förster has rightly pointed out you need to have the latest version of 
> HKL2000 to work with the HDF5 files from the Eiger detectors and as you must 
> be aware the HKL2000 license should include use of Eiger detectors. We have 
> recently used HKL2000 to process data from MASSIF-3 beamline at ESRF which 
> uses a EIGER X 4M detector but we had to upgrade to the latest version of 
> HKL2000.
>  
> With regards,
> Raghu
>  
>  
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK]On Behalf Of Andreas 
> Förster
> Sent: Tuesday, December 19, 2017 11:47
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] Eiger 16M detector in HKL2000
>  
> Dear Aidong,
>  
> as I don't have access to HKL2000 myself, I can't tell you what might need to 
> be done to have the software display EIGER X 16M images.  Wladek showed me 
> that it was possible.  It might just be a question of getting the latest 
> version.
>  
> There are alternatives to HKL-2000.
>  
> DIALS can process EIGER data with no questions asked 
> (https://dials.github.io/).  It is free, open-source software.  DIALS exists 
> as a powerful command line tool but can also be run through the xia2 pipeline 
> (https://xia2.github.io/).  Both are part of CCP4, but I'd recommend 
> installing the latest DIALS nightly because development is rapid.  The 
> developers respond quickly to questions.
>  
> XDS can process EIGER data 
> (http://xds.mpimf-heidelberg.mpg.de/html_doc/XDS.html).  It is free to 
> academic users.  To process data in HDF5 format (*.h5), make sure to download 
> the neggia plugin (https://www.dectris.com/support/downloads/software/neggia, 
> free, but registration required) and adjust the LIB= parameter to point to 
> where the plugin is saved.  XDS is a command line tool, but several GUIs 
> exist.
>  
> Please give DIALS or XDS a try and tell me how you get along.  If you 
> continue to encounter problems, let me and the beamline staff at SSRF know.
>  
> All best.
>  
>  
>  
> Andreas
>  
>  
>  
> On Tue, Dec 19, 2017 at 6:48 AM, Aidong Han <a...@xmu.edu.cn> wrote:
> Hi All,
> 
> We have recently collected several data sets in the Shanghai synchrotron 
> facility with a newly installed Eiger 16M. However, we are not able to 
> process these data using our home HKL2000 package. Even though we can easily 
> add this detector in, we can not display images. I believe ours has not been 
> properly set up. While we are still waiting for a response from HKL2000 
> administration managers (it has been a few days), I wonder whether someone 
> can provide me your solution since this detector has been in market for more 
> than a year. Thank you for your help.
> 
> Sincerely,
> 
> Aidong

Re: [ccp4bb] Eiger 16M detector in HKL2000

2017-12-18 Thread Raghurama P Hegde 
Dear Aidong,

As Dr. Förster has rightly pointed out you need to have the latest version of 
HKL2000 to work with the HDF5 files from the Eiger detectors and as you must be 
aware the HKL2000 license should include use of Eiger detectors. We have 
recently used HKL2000 to process data from MASSIF-3 beamline at ESRF which uses 
a EIGER X 4M detector but we had to upgrade to the latest version of HKL2000.

With regards,
Raghu


From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Andreas 
Förster
Sent: Tuesday, December 19, 2017 11:47
To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK>
Subject: Re: [ccp4bb] Eiger 16M detector in HKL2000

Dear Aidong,

as I don't have access to HKL2000 myself, I can't tell you what might need to 
be done to have the software display EIGER X 16M images.  Wladek showed me that 
it was possible.  It might just be a question of getting the latest version.

There are alternatives to HKL-2000.

DIALS can process EIGER data with no questions asked 
(https://dials.github.io/).  It is free, open-source software.  DIALS exists as 
a powerful command line tool but can also be run through the xia2 pipeline 
(https://xia2.github.io/).  Both are part of CCP4, but I'd recommend installing 
the latest DIALS nightly because development is rapid.  The developers respond 
quickly to questions.

XDS can process EIGER data 
(http://xds.mpimf-heidelberg.mpg.de/html_doc/XDS.html).  It is free to academic 
users.  To process data in HDF5 format (*.h5), make sure to download the neggia 
plugin (https://www.dectris.com/support/downloads/software/neggia, free, but 
registration required) and adjust the LIB= parameter to point to where the 
plugin is saved.  XDS is a command line tool, but several GUIs exist.

Please give DIALS or XDS a try and tell me how you get along.  If you continue 
to encounter problems, let me and the beamline staff at SSRF know.

All best.



Andreas



On Tue, Dec 19, 2017 at 6:48 AM, Aidong Han 
<a...@xmu.edu.cn<mailto:a...@xmu.edu.cn>> wrote:
Hi All,

We have recently collected several data sets in the Shanghai synchrotron 
facility with a newly installed Eiger 16M. However, we are not able to process 
these data using our home HKL2000 package. Even though we can easily add this 
detector in, we can not display images. I believe ours has not been properly 
set up. While we are still waiting for a response from HKL2000 administration 
managers (it has been a few days), I wonder whether someone can provide me your 
solution since this detector has been in market for more than a year. Thank you 
for your help.

Sincerely,

Aidong

Re: [ccp4bb] Eiger 16M detector in HKL2000

2017-12-18 Thread Andreas Förster 
Dear Aidong,

as I don't have access to HKL2000 myself, I can't tell you what might need
to be done to have the software display EIGER X 16M images.  Wladek showed
me that it was possible.  It might just be a question of getting the latest
version.

There are alternatives to HKL-2000.

DIALS can process EIGER data with no questions asked (
https://dials.github.io/).  It is free, open-source software.  DIALS exists
as a powerful command line tool but can also be run through the xia2
pipeline (https://xia2.github.io/).  Both are part of CCP4, but I'd
recommend installing the latest DIALS nightly because development is
rapid.  The developers respond quickly to questions.

XDS can process EIGER data (
http://xds.mpimf-heidelberg.mpg.de/html_doc/XDS.html).  It is free to
academic users.  To process data in HDF5 format (*.h5), make sure to
download the neggia plugin (
https://www.dectris.com/support/downloads/software/neggia, free, but
registration required) and adjust the LIB= parameter to point to where the
plugin is saved.  XDS is a command line tool, but several GUIs exist.

Please give DIALS or XDS a try and tell me how you get along.  If you
continue to encounter problems, let me and the beamline staff at SSRF know.

All best.



Andreas



On Tue, Dec 19, 2017 at 6:48 AM, Aidong Han  wrote:

> Hi All,
>
> We have recently collected several data sets in the Shanghai synchrotron
> facility with a newly installed Eiger 16M. However, we are not able to
> process these data using our home HKL2000 package. Even though we can
> easily add this detector in, we can not display images. I believe ours has
> not been properly set up. While we are still waiting for a response from
> HKL2000 administration managers (it has been a few days), I wonder whether
> someone can provide me your solution since this detector has been in market
> for more than a year. Thank you for your help.
>
> Sincerely,
>
> Aidong
>
>




-- 

Andreas Förster, Ph.D.
MX Application Scientist, Scientific Sales
Phone: +41 56 500 21 00 | Direct: +41 56 500 21 76 | Email:
andreas.foers...@dectris.com
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www.dectris.com

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[ccp4bb] Eiger 16M detector in HKL2000

2017-12-18 Thread Aidong Han 
Hi All,

We have recently collected several data sets in the Shanghai synchrotron 
facility with a newly installed Eiger 16M. However, we are not able to process 
these data using our home HKL2000 package. Even though we can easily add this 
detector in, we can not display images. I believe ours has not been properly 
set up. While we are still waiting for a response from HKL2000 administration 
managers (it has been a few days), I wonder whether someone can provide me your 
solution since this detector has been in market for more than a year. Thank you 
for your help.

Sincerely,

Aidong