Dear Coot’ers
I have recently been using coot very successfully to build into a map, however
it has just started crashing every time I click on baton build. Skeletonisation
works fine, as do other modelling tools in the same menu. I tried starting the
session in different ways, eg. from scratch rather than from a saved state, but
I get the same problem. I also tried centring on different parts of the model
before clicking baton building, but always the same crash.
Is it a coincidence that I just upgraded to ccp4i v7? I’m launching coot from
the terminal window, not from within ccp4i… and I’m using coot v 0.8.7
I copy below the info in the terminal window, in case that’s of use.
I’d be very grateful if anyone can give advice on how I can move forward with
my model building again!
All the best,
Cara.
skeletonization toplevel: 1317
skeletonization toplevel: 1317
INFO:: Creating a molecule for Baton Atoms
INFO:: setting spacegroup of Baton Atoms to be: P 1
INFO:: setting cell of Baton Atoms to be: Cell ( 212, 212, 212,90,
90,90)
Symmetry available for this molecule
INFO:: returning baton atom molecule 7
-- baton_next_ca_options
9e-14 xyz = ( 122.9, 103.4, 96.86)
9e-14 xyz = ( 123, 101.8, 96.3)
9e-14 xyz = ( 122.8, 102.6, 96.33)
9e-14 xyz = ( 123, 102.7, 97.09)
9e-14 xyz = ( 127.6, 101.5, 92.4)
9e-14 xyz = ( 127.7, 101.2, 92.59)
9e-14 xyz = ( 127.6, 102.1, 92.2)
9e-14 xyz = ( 128.2, 100.9, 93.05)
9e-14 xyz = ( 128.3, 101.4, 92.81)
9e-15 xyz = ( 123.2, 102.1, 94.28)
9e-15 xyz = ( 123.3, 101.2, 96.25)
9e-15 xyz = ( 122.9, 104.1, 96.2)
9e-15 xyz = ( 127, 102.7, 91.94)
9e-15 xyz = ( 123.2, 103.4, 97.41)
9e-15 xyz = ( 122.8, 102.7, 95.52)
9e-15 xyz = ( 128.1, 101.6, 92.56)
9e-16 xyz = ( 123, 102.1, 94.87)
--
Creating a molecule for Baton Atom Guide Points
!! Warning:: No symmetry available for this molecule
No Symmetry for this model
INFO:: backup file
coot-backup/Baton_Atom_Guide_Points_Thu_Mar__9_22:30:02_2017_modification_0.pdb.gz
/Applications/ccp4-7.0/bin/coot: line 284: 41788 Segmentation fault: 11
$coot_bin "$@"
coot-exe: "/Applications/ccp4-7.0/libexec/coot-bin"
coot-version:
/Applications/ccp4-7.0/libexec/coot-bin
platform:
/usr/bin/uname
core: #f
No core file found. No debugging
