Re: [Dspace-tech] A More Detailed AIP Tool Question
Tim, Many thanks for the response! I did see DS-1105 when it came across the list and thought that it looked like it was particularly related to what I've been experiencing. I've really been putting the AIP tool through a lot of various use cases lately. I'm focused mostly on getting a couple more specific tasks done for a project, but I hope to take some time afterward for concisely documenting my experience with the tool over the past several weeks in case it helps the community either with debugging or for others looking to get more acquainted with the tool. I just pulled up your new notes on the AIP Backup and Restore wiki page with the workarounds. I really appreciate your putting those notes together, I think it'll help a great deal. Again, hopefully sometime in the near future I may have something of my own to contribute to the efforts related to the AIP tool. Thanks again Tim! - Patrick E. On Wed, Feb 1, 2012 at 2:06 PM, Tim Donohue tdono...@duraspace.org wrote: Hi Patrick, Just getting around to looking at your detailed question here. I think, in a round-a-bout way you are actually running into a newly discovered known issue described here: https://jira.duraspace.org/**browse/DS-1105https://jira.duraspace.org/browse/DS-1105 I've just finished updating the latest AIP Backup Restore documentation with a warning about this known issue. Based on your description, I think you should be able to follow one of described workarounds to allow you to submit AIPs into your merged DSpace instance. The workarounds are described both in the JIRA issue above, and in a new warning box at the end of this section of the AIP Backup Restore docs: https://wiki.duraspace.org/**display/DSDOC18/AIP+Backup+**and+Restore#** AIPBackupandRestore-**SubmittinganAIPHierarchyhttps://wiki.duraspace.org/display/DSDOC18/AIP+Backup+and+Restore#AIPBackupandRestore-SubmittinganAIPHierarchy Hopefully this will help out. If I misunderstood, please let me know. But, I think your underlying problem here is that if you are just submitting a *single* Community or Collection AIP to a new DSpace, currently the AIP Backup Restore tool cannot create missing Groups/EPeople. Rather, the AIP Backup Restore tool is tailored more towards only creating Groups/EPeople automatically during a *full site restore*. - Tim On 1/12/2012 3:12 PM, Patrick Etienne wrote: DSpace Tech List, In further pursuit of exporting and importing data between two dspace instances, I have a somewhat more advanced question that I'm seeking help with. I'm running into a problem where an error is being thrown, letting me know that certain epersons already exist within the instance which is the import target. I've attempted a few things such as modifying the configuration of the export instance, modifying the configuration of the import instance, and removing epersons to no avail. I'll lay out the specifics below. If anyone has ideas, they'd be most appreciated. First I'll detail the specific action that I'm attempting to make. I have two dspace instances that I'm trying to merge in a specific way. One instance is a meta instance of sorts - it contains the structure of several different whole instances, where each outside whole instance is a community within the meta-instance. My task has been to make certain that all communities, collections and items from the original whole instance are present within the associated meta-instance community for that source instance. This means that the parent AIP objects (my term, not sure if I'm using it 100% correctly) are different for the source and destination instances. Specifically, when working with the source instance, I'm doing a full export of the entire site (-i handle/0). But when importing the export, I'm attempting to place the entire tree at a specific community within the destination instance (-p handle/1234). Here's the command that I'm using during the import (the export goes fine): ./dspace packager -r -a -t AIP -p 123456789/2814 -e administra...@domain.ext path-to-archive/aip.2012-01-**11.zip Now, I'll paste a copy of the specific error I'm running into: --**- Destination parents: Owner: 123456789/2814 Ingesting package located at /var/www/dspace_root/src/aip/**albany_dev.aip.2012-01-11/** albany_dev.aip.2012-01-11.zip Also ingesting all referenced packages (recursive mode).. This may take a while, please check your logs for ongoing status while we process each package. org.dspace.content.crosswalk.**CrosswalkInternalException: org.dspace.content.packager.**PackageException: EPerson u...@domain.ext already exists. at org.dspace.content.crosswalk.**RoleCrosswalk.ingest(** RoleCrosswalk.java:338) at org.dspace.content.crosswalk.**RoleCrosswalk.ingest(** RoleCrosswalk.java:257) at org.dspace.content.packager.**METSManifest.crosswalkXmd(** METSManifest.java:1151) at org.dspace.content.packager
Re: [Dspace-tech] [Dspace-devel] DSpace IDEs - Features, Observations, and Recommendations
Greetings All, I just wanted to say a quick thanks to Peter, Graham, Sands, Mark, etc for posting some reviews of their experiences with the various IDEs. I've been working with both NetBeans and IntelliJ since receiving those replies. Even though I've still not completely gotten dspace setup with any of these IDEs, working with the various options has greatly aided my understanding of things, and believe the ability to work with code as I hoped is within reach. - Patrick E. On Fri, Jan 13, 2012 at 10:46 PM, revskill revskil...@gmail.com wrote: Thank you for questions and replies. I have 6 months working with Dspace. My roadmap ( to me ) is - Trying to build Dspace from source using Maven + Eclipse, then import the project into eclipse to view the source. - Understand the database schema and basic class implementations. - To really understand how the code works, we need to understand the Cocoon 2 framework and its configurations. - Get used to XSLT / XPath / JQuery / CSS. 2012/1/14 Sands Alden Fish sa...@mit.edu Hi Patrick, I'm on of the developers that uses the NetBeans IDE for all of my DSpace work. I'm sure there are a lot of similarities in terms of functionality that IntelliJ provides, but as was mentioned, the auto-complete feature for methods and fields in a given class can give you a lot of efficiency. NetBeans (and other IDEs) also provide you with the ability to hold down Command (on a Mac, I imagine Ctrl on a PC) and click on a method or field and be taken directly to its definition in the code-base. I find this invaluable for groking code that I've never worked on before (in concert with the Forward and Back navigation buttons). Similarly, the Find Usages feature will allow you to search for a list of every use of a class or method, as well as any inheriting or implementing classes of a given class or interface. Also, I've found the NetBeans Maven integration to be completely painless. Finally, WRT integration with JIRA, NetBeans does have this, and I've used it successfully. http://wiki.netbeans.org/FaqHowToJira -- sands fish Senior Software Engineer MIT Libraries Technology Research Development sa...@mit.edu E25-131 On Jan 13, 2012, at 1:58 PM, Patrick Etienne wrote: Greetings again all, (seems I've been writing in a good bit lately) I'm writing in again to both Techs and Devs in hopes that folks might have time at some point to say a little something about different aspects of their experience with integrating their DSpace work into various IDEs. This primarily comes about as a result of DS-921https://jira.duraspace.org/browse/DS-921and the accompanying Confluence page on Tips for IDE Integrationhttps://wiki.duraspace.org/display/DSPACE/Developer+Guidelines+and+Tools. Long story short, I had no idea that the majority of DSpace committers / developers were using either IntelliJ or NetBeans for their IDE over Eclipse (I think this explains why there is so little DSpace/Eclipse documentation). My normal responsibilities within DSpace development at my institution primarily focus on either configuration management for our many DSpace instances or Manakin development (xslt), but I often find that I would like to be more knowledgable about the inner workings of DSpace and that a solid integration of DSpace into an IDE would facilitate this, which brings me to the point of this email. One of the tools I use most frequently in Eclipse is oXygen http://www.oxygenxml.com/. I'm aware that oXygen has no IntelliJ or NetBeans plugin, so am wondering whether those of you who use IntelliJ or NetBeans might be familiar with their innate capabilities in comparison to oXygen or if perhaps you might be aware of plugins for those IDEs that have similar features. The other question I have concerning IntelliJ and NetBeans is what experience folks might have with integration into Jira. I'm aware that Atlassian has plugins for both Eclipse and IntelliJ, but nothing for NetBeans. This is not a major issue, but more of just a discussion that I believe some people may be interested in when people have time to write in. Any time that you would take to speak about your experience with these issues would be greatly appreciated. Many Thanks, - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- RSA(R) Conference 2012 Mar 27 - Feb 2 Save $400 by Jan. 27 Register now! http://p.sf.net/sfu/rsa-sfdev2dev2___ Dspace-devel mailing list dspace-de...@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-devel -- RSA(R) Conference 2012 Mar 27 - Feb 2 Save $400 by Jan. 27 Register now! http://p.sf.net/sfu/rsa
[Dspace-tech] Removing Collection References from DSpace Search Results Pages
DSpace Techs Devs,
Greetings all, I'm working on a grant funded initiative for the University
System of Georgia which involves several (10 at the moment) different
academic institutions across the state of Georgia, all but two of whom are
running DSpace for their repository software. One of our deliverables for
the grant is a meta-repository covering communities, collections and items
for all the involved institutions. One constraint of the project is that
rather than providing users with an organization of content via
communities, collections and items, we're offering instead Disciplines
and items. A discipline is just a DSpace community but this organization
has allowed us a way to incorporate all institutions' records into a
subject hierarchy that makes sense for all institutions. In effort toward
reaching this goal, we've hidden or removed all references to collections
within the meta-repository... except for one.
The one reference to DSpace collections that we've been unable to remove or
shows up on DSpace's search results pages. When displaying search results
the first results are communities relevant to the search term(s). The
second set of results are those where the communities are relevant to those
terms. After this of course, the relevant items are show. I've been able to
modify the AbstractSearch.java in such a way that collection *references* are
not added to the *referenceSet*, the result of which is that collections
are not displayed in the search results. However, because of the way that
I've achieved this, the numbering of items is off-kilter and strange (to
the user) but predictable things happen. Rather than describing (which is
difficult) I'll offer an example (which should make the problem and
behavior completely clear).
Example:
Let's say we do a search for biology. The query returns, say, 30 records.
There are 6 communities, 11 collections, and 13 items. With this being the
case, there are (by default) 3 pages of results with 10 results per page.
After the customization to the AbstractSearch class (shown below) the
behavior of the interface is as follows - On the first page, there are 6
results shown, all 6 being community results (4 missing collections). On
the second page there are 3 results, all items (7 missing collections). On
the third page there are 10 results, all items.
AbstractSearch.java beginning at line 282:
if (resultDSO instanceof Community
//|| resultDSO instanceof Collection
)
{
if (referenceSet == null) {
referenceSet =
results.addReferenceSet(search-results-repository,
ReferenceSet.TYPE_SUMMARY_LIST,null,repository-search-results);
// Set a heading showing that we will be
listing containers that matched:
referenceSet.setHead(T_head2);
resultsContainsBothContainersAndItems = true;
}
referenceSet.addReference(resultDSO);
}
All that has been done in modifying the code was to comment out the adding
of resultDSO objects when they are instanceof Collection. This prevents
those *references* from being added to the *referenceSet*. I've been
digging through the code in attempt to understand how the search results
pages are built so that I may find an appropriate place higher up the chain
to make my modification, specifically so that individual search results
pages are built without awareness of Collection objects - which would
(theoretically) alleviate our difficulty. In searching through the code,
I've found of course that the QueryResults, QueryArgs,
AbstractDSpaceTransformer, AbstractWingTransformer, and DSpaceTransformer
classes are all in some way related, and that QueryResults especially seems
pivotal, but I've not been able to understand how the pieces come together
well enough to figure how where I might make changes to complete this last
piece of our collection references puzzle.
If anyone has tips, hints, suggestions or resources toward a solution on
this issue, it'd be greatly appreciated.
Many Thanks,
- Patrick E.
As a sidenote, I've been attempting to integrate my development DSpace
instance(s) into my IDE (Eclipse in my case). My hope was that I could
enable tomcat debugging and... attach source code to execution code so that
I could create break points and step through the code. I wanted to
accomplish this so that I could provide more detail when emailing the list,
but I've not yet been able to accomplish this with the DSpace software. But
that integration is something that I've been unable to accomplish for a
couple years now, so that's really a different subject. Point being I was
making the effort to provide as much detail for this issue as possible.
Patrick K. Etienne
Systems Analyst
Georgia Institute of Technology
Library Information Center
(404)
[Dspace-tech] DSpace IDEs - Features, Observations, and Recommendations
Greetings again all, (seems I've been writing in a good bit lately) I'm writing in again to both Techs and Devs in hopes that folks might have time at some point to say a little something about different aspects of their experience with integrating their DSpace work into various IDEs. This primarily comes about as a result of DS-921https://jira.duraspace.org/browse/DS-921and the accompanying Confluence page on Tips for IDE Integrationhttps://wiki.duraspace.org/display/DSPACE/Developer+Guidelines+and+Tools. Long story short, I had no idea that the majority of DSpace committers / developers were using either IntelliJ or NetBeans for their IDE over Eclipse (I think this explains why there is so little DSpace/Eclipse documentation). My normal responsibilities within DSpace development at my institution primarily focus on either configuration management for our many DSpace instances or Manakin development (xslt), but I often find that I would like to be more knowledgable about the inner workings of DSpace and that a solid integration of DSpace into an IDE would facilitate this, which brings me to the point of this email. One of the tools I use most frequently in Eclipse is oXygen http://www.oxygenxml.com/. I'm aware that oXygen has no IntelliJ or NetBeans plugin, so am wondering whether those of you who use IntelliJ or NetBeans might be familiar with their innate capabilities in comparison to oXygen or if perhaps you might be aware of plugins for those IDEs that have similar features. The other question I have concerning IntelliJ and NetBeans is what experience folks might have with integration into Jira. I'm aware that Atlassian has plugins for both Eclipse and IntelliJ, but nothing for NetBeans. This is not a major issue, but more of just a discussion that I believe some people may be interested in when people have time to write in. Any time that you would take to speak about your experience with these issues would be greatly appreciated. Many Thanks, - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- RSA(R) Conference 2012 Mar 27 - Feb 2 Save $400 by Jan. 27 Register now! http://p.sf.net/sfu/rsa-sfdev2dev2___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] AIP Tool Export / Import Troubles
DSpace Tech List,
I'm working on a task where I'm attempting to move content (communities,
collections, items) from one dspace instance into another using the DSpace
AIP tool and am having some trouble. I've been successful using it before
for some situations but I'm having a little trouble and was hoping that
someone may have some information that may help with the problem. It seems
that there are two issues that are likely not related. The first is when
trying to use the AIP tool on DSpace version 1.7.0. The other can occur on
both 1.7.0 and 1.7.2. Here's the scenario.
This is the command that I'm running (from the dspace bin directory of the
1.7.0 version instance I want to export from):
./dspace packager -d -a -t AIP -e u...@domain.ext HANDLE/0
{path-to-archive}/archive.aip.2012-01-12.zip
This command fails with the following error:
Error, Unknown package type: AIP
(run with -h flag for details)
After this I used the packager with the -h option and am instructed that
valid package types are: PDF, Adobe PDF, and METS. Attempting to use the
PDF or Adobe PDF types result in the same unknown package type error. Using
the METS type results in the following error:
Exception: Handle is null
java.lang.IllegalArgumentException: Handle is null
at
org.dspace.handle.HandleManager.findHandleInternal(HandleManager.java:473)
at org.dspace.handle.HandleManager.resolveToObject(HandleManager.java:277)
at org.dspace.app.packager.Packager.main(Packager.java:452)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183)
Attempting the original command on a 1.7.2 version of dspace with AIP as
the type:
./dspace packager -d -a -t AIP -e u...@domain.ext HANDLE/0
{path-to-archive}/archive.aip.2012-01-12.zip
Results in the same error as above:
Exception: Handle is null
java.lang.IllegalArgumentException: Handle is null
...
My questions are:
1) Should exporting via the AIP package type work with version 1.7.0? (from
the 1.7.x documentation on the wiki, the answer seems to be yes)
2a) Would I be correct in thinking for the second issue that there is
something wrong with my instances' handles?
2b) Outside of putting in the wrong handle name in the packager command,
what possible problems might I be having with handles?
I didn't originally build or setup the 1.7.0 instances that I'm dealing
with so have limited knowledge on how they were/are setup - but can find
out if needed.
Any tips, hints, suggestions or resources would be greatly appreciated.
- Patrick
--
Patrick K. Etienne
Systems Analyst
Georgia Institute of Technology
Library Information Center
(404) 385-8121
--
RSA(R) Conference 2012
Mar 27 - Feb 2
Save $400 by Jan. 27
Register now!
http://p.sf.net/sfu/rsa-sfdev2dev2___
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Re: [Dspace-tech] AIP Tool Export / Import Troubles
Hey Tim,
Thanks so much for your help with those issues. I had the notion that there
was some sort of configuration to do that I was missing but wasn't really
sure where to start (other than my searching around in DEBUG level log
files). I really appreciate the info, this should definitely get me back on
track (with both issues). The links to the resources are also certainly
helpful.
Cheers mate!
- Patrick
On Thu, Jan 12, 2012 at 11:43 AM, Tim Donohue tdono...@duraspace.orgwrote:
Hi Patrick,
It looks like you may have two separate (seemingly unrelated) issues here.
At a glance both look to be easy to resolve.
More inline below..
On 1/12/2012 9:50 AM, Patrick Etienne wrote:
DSpace Tech List,
I'm working on a task where I'm attempting to move content (communities,
collections, items) from one dspace instance into another using the
DSpace AIP tool and am having some trouble. I've been successful using
it before for some situations but I'm having a little trouble and was
hoping that someone may have some information that may help with the
problem. It seems that there are two issues that are likely not related.
The first is when trying to use the AIP tool on DSpace version 1.7.0.
The other can occur on both 1.7.0 and 1.7.2. Here's the scenario.
This is the command that I'm running (from the dspace bin directory of
the 1.7.0 version instance I want to export from):
./dspace packager -d -a -t AIP -e u...@domain.ext HANDLE/0
{path-to-archive}/archive.aip.**2012-01-12.zip
This command fails with the following error:
Error, Unknown package type: AIP
(run with -h flag for details)
This error means that the 'AIP' disseminator is not configured properly in
your 1.7.0 dspace.cfg file. I'm guessing that maybe you forgot to add it
in whenever you upgraded to 1.7.0 (or it somehow got accidentally removed
or commented out).
Your 'dspace.cfg' file should have an entry like this (notice the defined
disseminator for 'AIP')
-
# Packager Plugin Configuration:
# Configures the ingest and dissemination packages that DSpace supports.
# These Ingester and Disseminator classes support a specific package
file format
# (e.g. METS) which DSpace understands how to import/export. Each
Packager
# plugin often will use one (or more) Crosswalk plugins to translate
metadata (see above).
plugin.named.org.dspace.**content.packager.**PackageDisseminator = \
org.dspace.content.packager.**DSpaceAIPDisseminator = AIP, \
org.dspace.content.packager.**DSpaceMETSDisseminator = METS, \
org.dspace.content.packager.**RoleDisseminator = DSPACE-ROLES
plugin.named.org.dspace.**content.packager.**PackageIngester = \
org.dspace.content.packager.**DSpaceAIPIngester = AIP, \
org.dspace.content.packager.**PDFPackager = Adobe PDF, PDF, \
org.dspace.content.packager.**DSpaceMETSIngester = METS, \
org.dspace.content.packager.**RoleIngester = DSPACE-ROLES
-
Also, please note that if you forgot to add in the AIP disseminator
section to your dspace.cfg, it's also very possible that you may not have
all the new metadata crosswalk configurations in place either (which are
used by the AIP disseminator to export metadata)
You may wish to do a full comparision of your dspace.cfg file with the
default 1.7.0 dspace.cfg file. Pay close attention to any new crosswalk
settings, and make sure you also have all the new mets.dspaceAIP.*
settings which are used by the AIP ingester and the new aip.disseminate.*
settings used by the AIP disseminator.
Here's the 1.7.0 default dspace.cfg file:
http://scm.dspace.org/svn/**repo/dspace/tags/dspace-1.7.0/**
dspace/config/dspace.cfghttp://scm.dspace.org/svn/repo/dspace/tags/dspace-1.7.0/dspace/config/dspace.cfg
More on the dspace.cfg configurations used by the AIP Backup Restore
Tool can be found in the documentation at:
https://wiki.duraspace.org/**display/DSDOC17/AIP+Backup+**and+Restore#**
AIPBackupandRestore-**Configurationin%27dspace.cfg%**27https://wiki.duraspace.org/display/DSDOC17/AIP+Backup+and+Restore#AIPBackupandRestore-Configurationin%27dspace.cfg%27
Attempting the original command on a 1.7.2 version of dspace with AIP as
the type:
./dspace packager -d -a -t AIP -e u...@domain.ext HANDLE/0
{path-to-archive}/archive.aip.**2012-01-12.zip
Results in the same error as above:
Exception: Handle is null
java.lang.**IllegalArgumentException: Handle is null
In this case, it looks like your 'packager' command is slightly wrong. The
Handle should be specified using the '-i' flag. See the documentation
around exporting an AIP hierarchy:
https://wiki.duraspace.org/**display/DSDOC17/AIP+Backup+**and+Restore#**
AIPBackupandRestore-**ExportingAIPHierarchyhttps://wiki.duraspace.org/display/DSDOC17/AIP+Backup+and+Restore#AIPBackupandRestore-ExportingAIPHierarchy
So, your command should instead be (notice I added a '-i' before the
Handle):
./dspace packager -d -a -t AIP -e u...@domain.ext -i HANDLE/0
Re: [Dspace-tech] AIP Tool Export / Import Troubles
Hi Miguel,
Since I've been working on this recently I thought I'd take a look and see
what I could find. I went to the dspace wiki and specifically went to the
online documentation for version 1.5.2 at the following address:
http://www.dspace.org/1_5_2Documentation/ch09.html#N139C1
It seems to say here that the format exported by the version of the tool in
1.5.2 does not create a true AIP. There are also some limitations listed:
*) No corresponding import tool yet
*) No structmap section
*) Some technical metadata not written, e.g. the primary bitstream in a
bundle, original filenames or descriptions.
*) Only the MIME type is stored, not the (finer grained) bitstream format.
I'm not familiar enough with the system to say that later versions could
not import the 1.5.2 export, but it does not seem likely. If nothing else
though, I believe that you could feasibly upgrade your 1.5.2 instance to
1.7.2 or 1.8.1 and be successful with your exports/imports as long as
things were configured correctly. Also, if you did choose to go this route,
I would highly recommend moving past 1.7.2 to the latest 1.8.1 because of a
couple significant issues with version 1.7.2 and the AIP tool (one is a
memory problem which can have an effect when exporting a large volume of
records [I've only had this issue when exporting an entire site], the other
involves the AIP tool's ability to auto-create necessary metadata fields
when importing). I haven't tested things in 1.8.x yet, but I've either been
told or have seen the resolved Jira for both these issues in 1.8.x.
If anyone else has more specific information, please do contribute.
Cheers!
- Patrick
Dublin Core to MODS mapping is very simple, probably needs verification
2012/1/12 Miguel Ángel 0rtiz Camilo michael0r...@hotmail.com
Hey everyone!
I have the 1.5.2 version of Dspace (Old Production Server), I need to
make a backup and I've tried for several ways, but none let me transfer the
data to 1.8.0 version. There's a way? or I need to continue with my reverse
software engineering at scripting at database to have this done?
Best Regards
Miguel
--
Date: Thu, 12 Jan 2012 12:13:07 -0500
From: patrick.etie...@library.gatech.edu
To: tdono...@duraspace.org
CC: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] AIP Tool Export / Import Troubles
Hey Tim,
Thanks so much for your help with those issues. I had the notion that
there was some sort of configuration to do that I was missing but wasn't
really sure where to start (other than my searching around in DEBUG level
log files). I really appreciate the info, this should definitely get me
back on track (with both issues). The links to the resources are also
certainly helpful.
Cheers mate!
- Patrick
On Thu, Jan 12, 2012 at 11:43 AM, Tim Donohue tdono...@duraspace.orgwrote:
Hi Patrick,
It looks like you may have two separate (seemingly unrelated) issues here.
At a glance both look to be easy to resolve.
More inline below..
On 1/12/2012 9:50 AM, Patrick Etienne wrote:
DSpace Tech List,
I'm working on a task where I'm attempting to move content (communities,
collections, items) from one dspace instance into another using the
DSpace AIP tool and am having some trouble. I've been successful using
it before for some situations but I'm having a little trouble and was
hoping that someone may have some information that may help with the
problem. It seems that there are two issues that are likely not related.
The first is when trying to use the AIP tool on DSpace version 1.7.0.
The other can occur on both 1.7.0 and 1.7.2. Here's the scenario.
This is the command that I'm running (from the dspace bin directory of
the 1.7.0 version instance I want to export from):
./dspace packager -d -a -t AIP -e u...@domain.ext HANDLE/0
{path-to-archive}/archive.aip.**2012-01-12.zip
This command fails with the following error:
Error, Unknown package type: AIP
(run with -h flag for details)
This error means that the 'AIP' disseminator is not configured properly in
your 1.7.0 dspace.cfg file. I'm guessing that maybe you forgot to add it
in whenever you upgraded to 1.7.0 (or it somehow got accidentally removed
or commented out).
Your 'dspace.cfg' file should have an entry like this (notice the defined
disseminator for 'AIP')
-
# Packager Plugin Configuration:
# Configures the ingest and dissemination packages that DSpace supports.
# These Ingester and Disseminator classes support a specific package
file format
# (e.g. METS) which DSpace understands how to import/export. Each
Packager
# plugin often will use one (or more) Crosswalk plugins to translate
metadata (see above).
plugin.named.org.dspace.**content.packager.**PackageDisseminator = \
org.dspace.content.packager.**DSpaceAIPDisseminator = AIP, \
org.dspace.content.packager.**DSpaceMETSDisseminator = METS, \
org.dspace.content.packager.**RoleDisseminator
[Dspace-tech] A More Detailed AIP Tool Question
) at org.dspace.content.crosswalk.METSRightsCrosswalk.ingest(METSRightsCrosswalk.java:426) at org.dspace.content.packager.METSManifest.crosswalkXmd(METSManifest.java:1151) at org.dspace.content.packager.METSManifest.crosswalkObjectOtherAdminMD(METSManifest.java:1072) at org.dspace.content.packager.AbstractMETSIngester.ingestObject(AbstractMETSIngester.java:459) at org.dspace.content.packager.AbstractMETSIngester.ingest(AbstractMETSIngester.java:234) at org.dspace.content.packager.AbstractPackageIngester.ingestAll(AbstractPackageIngester.java:120) at org.dspace.content.packager.AbstractPackageIngester.ingestAll(AbstractPackageIngester.java:165) at org.dspace.content.packager.AbstractPackageIngester.ingestAll(AbstractPackageIngester.java:165) at org.dspace.content.packager.AbstractPackageIngester.ingestAll(AbstractPackageIngester.java:165) at org.dspace.content.packager.AbstractPackageIngester.ingestAll(AbstractPackageIngester.java:165) at org.dspace.app.packager.Packager.ingest(Packager.java:515) at org.dspace.app.packager.Packager.main(Packager.java:427) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183) org.dspace.content.crosswalk.CrosswalkInternalException: Cannot restore Group permissions on object (type=COLLECTION, handle=ALBANYDEV/58, ID=64). The Group named 'COLLECTION_64_ADMIN' is missing from DSpace. Please restore this group using the SITE AIP, or recreate it. --- Another thing I tried hinged on the following import property: #mets.dspaceAIP.ingest.createSubmitter = false I'm not sure how closely related it might be, but I enabled the directive and set it to false (even though the default is listed as being false) just to see if it had an effect. It did not. The last thing I tried was to make a copy of the destination instance, then remove the offending epersons from the instance, then try the import again. This worked okay with the first duplicate eperson, but even though I'm an administrator for the system, I did not have the option of deleting the second eperson from the system (the checkmark box from the xmlui was greyed-out and unselectable). I'm not sure what to try from here - outside of removing epersons via SQL and trying the import again. Even then, I'm not sure what affects there might be on my destination instance from removing the necessary epersons. Any help or advice one could offer on this issue would most definitely be appreciated. Many Thanks! - Patrick Etienne -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- RSA(R) Conference 2012 Mar 27 - Feb 2 Save $400 by Jan. 27 Register now! http://p.sf.net/sfu/rsa-sfdev2dev2___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] Mirage, jQuery, jQueryUI, Modernizer
Greetings DSpace Techies, I've been working recently with jQuery for some transition effects on one of our dspace instances and had a couple of questions I wanted to ask mainly for verification purposes. The first thing I've noticed is an apparent difference between the inclusion of javascript files between Mirage based themes and other themes. Specifically, that with non-Mirage themes the inclusion seems to occur within the sitemap.xmap file for the theme, but with Mirage-based themes the jQueryUI and Modernizr files are added within the head/ section of the page-structure.xsl. I'm new to Modernizr and wanted to make sure that the method of inclusion wouldn't have any effect on potential functionality. I don't think that it would, but wanted to ask (documentation on the Modernizr site seems to indicate that as long as it's in the head and posted after the css file references, things should work fine). The second thing is that for 1.7.2 and 1.8.0 it seems as though a customized (and minimized) jQueryUI file is included but there is no jQuery file. I had thought that perhaps the jQueryUI file also included the requisite jQuery class(es) but unless I specifically download and add a reference for a current version of jQuery, the jQueryUI file throws an error which states that the jQuery class is not defined. Instructions on the dspace wikihttp://www.dspace.org/1_7_0Documentation/Mirage%20Configuration%20and%20Customization.html#MirageConfigurationandCustomization-ConfigurationParameters state that: jQuery and jQueryUI are included by default but again, I've been unable to find jQuery included anywhere and can only resolve the jQuery class is undefined error by adding my own copy/reference. I just wanted to check on these things and see whether there was something I was missing. Many thanks for any tips or hints. - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- Cloud Services Checklist: Pricing and Packaging Optimization This white paper is intended to serve as a reference, checklist and point of discussion for anyone considering optimizing the pricing and packaging model of a cloud services business. Read Now! http://www.accelacomm.com/jaw/sfnl/114/51491232/___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] Discovery-based search results being returned in (mislabeled) ascending rather than descending order
DSpace Group - I'm once again attempting to see whether representatives from other institutions/organizations have had this particular behavioral difficulty with their implementations of dspace. The issue is that of having search results returned in ascending (least relevant first) order rather than descending (most relevant first). As a side note, it also seems that even though ascending results are returned, the interface displays descending as the label for default results being displayed. This is, I believe, an issue that only happens through the discovery interface. I've narrowed down as many possibilities of potential influences on this behavior as possible to locate the origin of the problem and identify a solution but have not been able to resolve it. It is possible that there is some configuration directive that I'm not familiar with that's telling dspace to behave this way, be even if that were the case, the results are still being mislabeled (though this could be a usability issue, but I don't feel that it is). I've created a Jira for the issuehttps://jira.duraspace.org/browse/DS-1071. If you have any tips, hints, suggestions, or experience in general that might help shed light on this issue, please contact me through the list, off-list email, or through the Jira issue comment system. Many Thanks, - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- RSA(R) Conference 2012 Save $700 by Nov 18 Register now http://p.sf.net/sfu/rsa-sfdev2dev1___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Style news-xmlui.xml
Antonio - Others may be more familiar than myself, but I believe I'd read that the news-xmlui.xml file is being phased out of existence. I don't have access to my work machine at the moment so can't give specific details, but I can say that you can edit the xsl files to ignore the content from the news-xmlui.xml file and instead write something into the xsl files that will include the content that you desire while providing the ability to mark up the content in any (well-formed / valid) way that you see fit. If you need specific details, I'm happy to help when I'm back in front of my machine tomorrow. - Patrick E. On Thu, Oct 13, 2011 at 7:33 PM, Antonio Calderón neocalde...@gmail.comwrote: Hi folks. Is it possible to add formatting or style to 'news-xmlui.xml'? The labels 'b' or i are not working. I only found this: http://www.dspace.org/1_6_0Documentation/ch07.html#N15659 Thank you for your help. -- Antonio Calderón - Calderón Cardona Ltda. http://calderoncardona.com | http://ventura-systems.net *Proudly running Debian GNU/Linux. -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2d-oct ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2d-oct___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] DSpace Issue: Sort by - Issue Date not functioning
DSpace Techies - We're having a problem with part of the user interface of our main institutional repository (running dspace 1.7.1). I'm going to toss out some URLs with examples so that you can (if you like) follow along in a tangible way. Here's a step-by-step recreation of the problem: Browse to: http://smartech.gatech.edu/handle/1853/36700 Perform a search within this community and its collections: for dellaert. Change results/page to 100 and press (submit the form) go (not necessary, but visually accentuates that records are not reordered in the next step). Change sort items by from relevance to issue date, press go (submit the form) Note here that the order is not affected. Nor is it if you change from Ascending to Descending are resubmit the form. A few more notes: I've attempted this same search in many communities/collections with different searches and each browse by issue date change fails. The html form seems to be working properly as the query part of the url string responds appropriately to any and all changes. The index is rebuilt through a cron job nightly. A different instance of dspace on a different server with the same exact theme behaves correctly (with order being changed per issue date). Instances with the same theme have been setup fresh from 1.7.2 and 1.7.1 builds and behave correctly. Our current solution is to rebuild the index from scratch in the wee hours of the morn' come Sunday. I just wanted to write in to see if anyone had any suggestions outside of rebuilding the index from scratch, on the case that Tuesday rolls around and this hasn't fixed the issue. Any tips, hints, suggestions or relevant resources would be greatly appreciated! - Patrick E. One other tidbit that might be relevant: Solr is enabled for this instance but only for statistics. The Discovery aspect is not enabled. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- Special Offer -- Download ArcSight Logger for FREE! Finally, a world-class log management solution at an even better price-free! And you'll get a free Love Thy Logs t-shirt when you download Logger. Secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsisghtdev2dev___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] Requesting Troubleshooting Suggestions - AIP Export Errors
Tim, Thanks so much! This is wonderful information. I really appreciate your taking the time to write all this up. I'm going to be looking into the things you mentioned here and do a little exploring to see if I can eliminate the problem or at least use this information to narrow down even further what is really going on. I likely won't email back about it for perhaps two weeks (other things going on), but I'll certainly get back to you with whatever information that I'm able that might help toward the stability of the AIP tool. Thanks again! - Patrick On Mon, Aug 22, 2011 at 2:09 PM, Tim Donohue tdono...@duraspace.org wrote: Hi Patrick, On 8/19/2011 2:33 PM, Patrick Etienne wrote: To start, I should toss out a little system information: DSpace v. 1.7.2 Java version 1.6.0_26 PostgresSQL 8.4.7 All on the same RedHat box. Thanks! This all looks reasonable/normal. The next important detail is that I should have removed the manifestOnly option from the command as I've experienced the error with manifestOnly set to true as well as left out (defaulted to false). As a side note, this use of manifestOnly was more of an afterthought (I'd noted it's experimental nature), and I'm not certain that it actually does quite what I was looking for. My purpose is setting up instances with data so that I can fully test themes I'm building for various institutions, but I'm not really needing content files (bitstreams), just the communities, sub-communities, collections, item-pages, and /references/ to content files (having files or not doesn't really matter as much, but it'd be preferable to leave out the asset store). From the description in your email, it does sound indeed as though setting the manifestOnly option to true would be good for my use-case /as long as/ the feature was stable (which, as it has been said, it's not as of yet). But again, the manifestOnly option is not a priority (for me) at this point. OK, good to know. Yes, the manifestOnly option will not give you bitstreams (as you expected). It just includes metadata structure (communities/collections etc). However, as mentioned, it is still very experimental. I've admittedly never tried to migrate content using the manifestOnly option -- so, I'm not sure how stable the import will be. But, as the import isn't the problem right now...we can leave that for later. It sounds as though the next piece of the puzzle might be the database connection. The postgres service that I'm using for the instance(s) is on the same machine as the dspace instance(s). I think that eliminates network troubles as a potential cause (not that there couldn't be something else going on with the postgres service). Next up would be a little more detail concerning the behavior of the attempted command. The error does not happen immediately, it does run for a while before erroring out. snip After this I ended up shutting down all the tomcat instances save for the large one and also increased the db.maxconnections to 400 (just to give it a whirl). This seemed to allow the AIP export to go even longer before erroring out. Hmm..I wonder. From the reaction after increasing 'db.maxconnections', it sounds as though it could be that your DSpace is just running out of database connections (as though connections are not being closed properly). It's possible you are encountering this bug (which will be fixed in 1.8.0): https://jira.duraspace.org/**browse/DS-930https://jira.duraspace.org/browse/DS-930 The AIP Export uses the RoleCrosswalk listed in DS-930 (to export user permissions/groups into the DSPACE-ROLES schema). We realized there was a small bug in the RoleCrosswalk, where it wasn't closing its DB Connections properly. So, if you don't care whether you are moving user permissions/groups, you can turn off usage of the RoleCrosswalk by changing the following in your dspace.cfg. First, you'd want to turn off the DSPACE-ROLES schema export, by removing it from this line (also remove the comma) aip.disseminate.techMD = PREMIS, DSPACE-ROLES Second, you'd want to turn off the METSRIGHTS schema export, by removing it from this line (also remove the last comma) aip.disseminate.rightsMD = DSpaceDepositLicense:DSPACE_**DEPLICENSE, \ CreativeCommonsRDF:DSPACE_**CCRDF, CreativeCommonsText:DSPACE_**CCTEXT, METSRIGHTS What this does is disables the export of users/groups (DSPACE-ROLES) and permissions (METSRIGHTS) in AIPs. WARNING: in most backup scenarios, you would NOT want to do this, as you cannot restore users/groups/permissions if they are not in the AIPs. However, for your purposes of moving around test content, you may not care whether users/groups/permissions are moved successfully. More info about DSPACE-ROLES and METSRIGHTS schemas can be found at: https://wiki.duraspace.org/**display/DSDOC/DSpace+AIP+**Formathttps://wiki.duraspace.org/display/DSDOC/DSpace+AIP+Format If you
Re: [Dspace-tech] Requesting Troubleshooting Suggestions - AIP Export Errors
Tim - Many thanks for your help! I'm going to try to provide some additional information to see about teasing out the cause of this particular problem. To start, I should toss out a little system information: DSpace v. 1.7.2 Java version 1.6.0_26 PostgresSQL 8.4.7 All on the same RedHat box. The next important detail is that I should have removed the manifestOnly option from the command as I've experienced the error with manifestOnly set to true as well as left out (defaulted to false). As a side note, this use of manifestOnly was more of an afterthought (I'd noted it's experimental nature), and I'm not certain that it actually does quite what I was looking for. My purpose is setting up instances with data so that I can fully test themes I'm building for various institutions, but I'm not really needing content files (bitstreams), just the communities, sub-communities, collections, item-pages, and *references* to content files (having files or not doesn't really matter as much, but it'd be preferable to leave out the asset store). From the description in your email, it does sound indeed as though setting the manifestOnly option to true would be good for my use-case *as long as* the feature was stable (which, as it has been said, it's not as of yet). But again, the manifestOnly option is not a priority (for me) at this point. It sounds as though the next piece of the puzzle might be the database connection. The postgres service that I'm using for the instance(s) is on the same machine as the dspace instance(s). I think that eliminates network troubles as a potential cause (not that there couldn't be something else going on with the postgres service). Next up would be a little more detail concerning the behavior of the attempted command. The error does not happen immediately, it does run for a while before erroring out. I'm not sure about how to get exact statistics for how much of the process is being completed, but I can give some info. The instance I'm attempting to pull from has 28 communities and 82 sub-communities (all but a few have items). I'm not sure how many collections but it should have between 6,000 to 8,000 items. I've run the command numerous times and seem to semi-randomly get between 55mb and 125mb's worth of data. That ranges between 2, 6, or more communities depending on the run (with collection and item numbers varying widely). In attempting to do some more detailed troubleshooting I delved into a DEBUG level of dspace logs. Unfortunately the DEBUG level only gave me one additional line from which to investigate the issue: 2011-08-19 14:05:51,512 DEBUG net.sf.ehcache.CacheManager @ CacheManager already shutdown The rest of the log file didn't show anything relevant. From there I was going to try to take a look at the postgres logs but 1) I don't have read access to them, 2) They don't have query level information (not sure how necessary that would be), and 3) My sysadmin seemed to think that it wouldn't worth checking at this point. He did, however, suggest some other things to check on which I have. We have several (around 10) tomcat instances serving dspace installations on this server. Half have no data and are never used. The other half have descent stores of info (communities, collections, items, bitstreams) but are very infrequently accessed. One instance is large and has more regular (but hard for me to define in volume) usage. I ended up changing all the instances to have a db.maxidle value of 5 (rather than the default -1 [unlimited]). This seemed to enable the AIP export process to run longer before it errored out. After this I ended up shutting down all the tomcat instances save for the large one and also increased the db.maxconnections to 400 (just to give it a whirl). This seemed to allow the AIP export to go even longer before erroring out. Another interesting (to me at least) thing is that I also tried changing the db.maxidle down to a value of 1. The trial here lasted a long time, got a lot of data, but ended due to exceeding the db.maxwait interval (I'd set it to 1 milliseconds) for the idle thread. I'm not sure what all exactly this would tell us, but at least some of it will be relevant/helpful info. One other thing that I discovered while tweaking with the database settings was that running the AIP export while tailing the log file showed that the org.postgresql.util.PSQLException popped up at least a few times for each AIP export I'd attempted to do. Is it a specific object in DSpace that causes the error? This is a great question. I'm not sure how to answer it though (would probably need a query level of postgres logs?). I can say that for certain this was the case for an earlier error (not one that related to postgres issues) that we'd encountered with the AIP tool. The cause of the earlier error was that we'd somehow managed to have a couple items in the instance that did not have titles. After making sure that the items were removed or given dc.title
[Dspace-tech] Requesting Troubleshooting Suggestions - AIP Export Errors
DSpace Techies, I've been attempting to leverage the new AIP tool in order to export data from one dspace instance into another for the purpose of testing development instances (with which I'm building themes) and have come across a java error that I can't seem to figure out how to resolve. I'm not the sys admin of servers responsible for hosting the instances but do have access to enough that I should be able to do some troubleshooting. The error is as follows: - [dspace_gkr@gkr-dev exports]$ ../gkrtest/bin/dspace packager -d -a -t AIP -o manifestOnly=true -e patrick.etie...@library.gatech.edu -i GKRTEST/0 harvest_test-aip.zip Disseminating DSpace SITE [ hdl=GKRTEST/0 ] to harvest_test-aip.zip Also disseminating all child objects (recursive mode).. This may take a while, please check your logs for ongoing status while we process each package. Exception: An I/O error occured while sending to the backend. org.postgresql.util.PSQLException: An I/O error occured while sending to the backend. at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:214) at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:354) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeQuery(AbstractJdbc2Statement.java:258) at org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96) at org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96) at org.dspace.storage.rdbms.DatabaseManager.queryTable(DatabaseManager.java:225) at org.dspace.authorize.AuthorizeManager.getPolicies(AuthorizeManager.java:511) at org.dspace.content.crosswalk.METSRightsCrosswalk.disseminateElement(METSRightsCrosswalk.java:156) at org.dspace.content.packager.AbstractMETSDisseminator.crosswalkToMetsElement(AbstractMETSDisseminator.java:1342) at org.dspace.content.packager.AbstractMETSDisseminator.makeMdSec(AbstractMETSDisseminator.java:597) at org.dspace.content.packager.AbstractMETSDisseminator.addToAmdSec(AbstractMETSDisseminator.java:710) at org.dspace.content.packager.AbstractMETSDisseminator.addAmdSec(AbstractMETSDisseminator.java:737) at org.dspace.content.packager.AbstractMETSDisseminator.makeManifest(AbstractMETSDisseminator.java:889) at org.dspace.content.packager.AbstractMETSDisseminator.disseminate(AbstractMETSDisseminator.java:230) at org.dspace.content.packager.DSpaceAIPDisseminator.disseminate(DSpaceAIPDisseminator.java:157) at org.dspace.content.packager.AbstractPackageDisseminator.disseminateAll(AbstractPackageDisseminator.java:86) at org.dspace.content.packager.AbstractPackageDisseminator.disseminateAll(AbstractPackageDisseminator.java:120) at org.dspace.content.packager.AbstractPackageDisseminator.disseminateAll(AbstractPackageDisseminator.java:141) at org.dspace.content.packager.AbstractPackageDisseminator.disseminateAll(AbstractPackageDisseminator.java:132) at org.dspace.content.packager.AbstractPackageDisseminator.disseminateAll(AbstractPackageDisseminator.java:152) at org.dspace.app.packager.Packager.disseminate(Packager.java:635) at org.dspace.app.packager.Packager.main(Packager.java:460) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183) Caused by: java.net.SocketException: Socket closed at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:99) at java.net.SocketOutputStream.write(SocketOutputStream.java:136) at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65) at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123) at org.postgresql.core.PGStream.flush(PGStream.java:532) at org.postgresql.core.v3.QueryExecutorImpl.sendSync(QueryExecutorImpl.java:672) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:187) ... 27 more - I know that our sys admin has been able to do successful exports of single items, but so far we've been unable to do a full site export. I'll need a lot of data in order to adequately test the themes I'm working on. If anyone could point me in the right direction (or even just make some suggestions) on how to resolve this issue, it would be greatly appreciated! - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library
[Dspace-tech] DSpace 1.7.0 Maven 3.0.2 - DuplicateProjectException / Missing pom.xml properties
DSpace Techies and Devs -
I wanted to see whether anyone had had success setting up DSpace 1.7.0 using
Maven 3.0.2. I ask because I'm attempting to put together a guide / tutorial
/ how-to for establishing a solid and streamlined workflow for maintaining
multiple development and production dspace environments (we have a grant
project where we will be hosting several institutions' dspace repositories).
To make a long story short, it seems as though installation works fine on
maven 2.2.1 but fails on 3.0.2 with the following [ERROR]:
*Two or more projects in the reactor have the same identifier, please make
sure that groupId:artifactId:version is unique for each project:*(...)
(goes on to list all dspace maven projects)
In effort to investigate the problem, I put together a google
spreadsheethttps://spreadsheets.google.com/ccc?key=0AgxlFEYcNkPzdC13N3V1cXdPdDRuYWdWRVJWTFo4Q0Ehl=enauthkey=CNqj2pAGlisting
all the dspace maven project pom.xml files as well as (manually
checking their) groupId:artifactId:version strings. Unfortunately (or
fortunately?) there were no duplicate project identifiers. However, after
some more searching I found that it's likely *not a problem with an actual
duplicate project identifier* as much as it is having *two pom.xml files
referencing the same maven module/*. There's information on the net about
possibly changing this error message so it better reflects the actual cause
of the problem (jira over at
Sonatypehttps://issues.sonatype.org/browse/TYCHO-531),
but I couldn't find a maven specific bug report. Note, the bug would only be
about the information the error message provides; referencing the same maven
module/ from two different pom.xml files is still a valid problem (or so
it seems) in 3.0.2
Specifically, the two pom.xml files that seem to be contributing to the
problem are the {dspace-1.7.0-src-release}/pom.xml and the
{dspace-1.7.0-src-release}/dspace/pom.xml. Both files make references to the
following project modules/:
dspace-ap
dspace-stats
dspace-discovery
dspace-oai
dspace-jspui
dspace-sword
dspace-xmlui
dspace-lni
This is probably a good point at which to say that I'm not terribly familiar
with maven. I'm not sure why exactly it seems to be within spec to reference
the same module/ with two different pom.xml files within 2.2.1 but not
with 3.0.2. However, it does seem to be the source of the error I listed
above (or at least, from what I can tell). If anyone has any tips, hints,
resources, or suggestions related to getting maven 3.0.2 to play nice with
dspace (or vice-versa) please let me know!
- Patrick E.
--
Patrick K. Etienne
Systems Analyst
Georgia Institute of Technology
Library Information Center
(404) 385-8121
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Re: [Dspace-tech] DSpace 1.7.0 Maven 3.0.2 - DuplicateProjectException / Missing pom.xml properties
Elliot (et al), Many thanks for the reply. You might have to say that I am both using and not using Eclipse, though the part where I am may be interfering with the part where I am not. I'm attempting to setup both a local development environment through Eclipse as well as a non-Eclipse (command-line) setup to mimic the development and production servers that my system administrator has setup (in effort to learn how best to streamline workflow for maintaining multiple instances). I'm going to briefly describe my setup in hopes that providing the info will help narrow down the difficulty (though it may just be trying to use Eclipse in tandem with the command line). Using Eclipse, I create a new (generic) project from svn and download the source to (rather than the regular workspace directory) my /usr/local/src directory (One-Big-Project approach, which may be a problem). From there I'll follow as updated instructions as I can from the Eclipse / DSpace setup wiki entry (including Enabled Nested Modules). From here I have all the other required dspace tools installed and the dspace.cfg configured etc. At this point I try running a Maven goal on the source directory as a test (mvn clean, for instance). I'll try running this same goal several ways, here are the results: Eclipse 3.6 (Helios) - Embedded Maven 3.0.2 - Fails Eclipse 3.6 (Helios) - External 3.0.2 - Fails Eclipse 3.6 (Helios) - External 2.2.1 - Succeeds Command Line - 3.0.2 - Fails Command Line - 2.2.1 - Succeeds My question at this point would be, is there something inherently different about downloading from svn to my source directory using the command line vs. performing the same operation through project creation from svn within Eclipse? Would attempting to Enable Dependency Management in Eclipse (or some other operation within the Eclipse / DSpace setup instructionshttps://wiki.duraspace.org/display/DSPACE/IDE+Integration+-+DSpace,+Eclipse+and+Tomcat#IDEIntegration-DSpace%2CEclipseandTomcat-WorkingwithDSpace1.5) taint the files in my source directory to the effect of having a Maven goal fail when run via the command line? All failures are the same error message. One significant thing I found interesting is that setting up one project per DSpace module would alleviate the referencing the same module within multiple pom.xml files problem (I think), due to them being separate projects rather than one big project. I did see that m2eclipse is behaving differently in the eclipse GUI due to some Eclipse API changes in 3.6 (run configurations, etc). I didn't realize that Enable Nested Modules wasn't supported in later versions, that may be the deal right there. As a general public FYI, it seems that m2eclipse (or like functionality) has been slated for core integration in 3.7 (due out June 22nd). That could be interesting. I think I'm going to try setting up DSpace from scratch all via command line into a different location, but I have the feeling that I'll still hit the same error. Elliot, again thanks for the reply. This has given me good food for thought and a way to continue trouble shooting. Cheers mate! If anyone else happens to have experience with similar issues, any tips or suggestions would be appreciated. - Patrick E. On Mon, Mar 7, 2011 at 10:43 AM, edawson edaw...@maf.org wrote: Hi Patrick, Are you using Eclipse? I was getting very similar errors when I didn’t have my projects set up correctly. I never had any trouble using Maven 3.02 via command line. With a bit of searching I found out it looks like the Maven option to “Enable Nested Modules” isn’t supported in the later versions of m2eclipse. So I set up one project per DSpace module and it all seemed to work. The m2eclipse dependency management then was able to correctly identify the modules as separate Java projects. I hope this helps (obviously not if you’re not using eclipse). Elliot *From:* Patrick Etienne [via DSpace] [mailto:[hidden email]http://user/SendEmail.jtp?type=nodenode=3339268i=0by-user=t] *Sent:* Monday, March 07, 2011 7:57 AM *To:* Elliot Dawson *Subject:* DSpace 1.7.0 Maven 3.0.2 - DuplicateProjectException / Missing pom.xml properties DSpace Techies and Devs - I wanted to see whether anyone had had success setting up DSpace 1.7.0 using Maven 3.0.2. I ask because I'm attempting to put together a guide / tutorial / how-to for establishing a solid and streamlined workflow for maintaining multiple development and production dspace environments (we have a grant project where we will be hosting several institutions' dspace repositories). To make a long story short, it seems as though installation works fine on maven 2.2.1 but fails on 3.0.2 with the following [ERROR]: *Two or more projects in the reactor have the same identifier, please make sure that groupId:artifactId:version is unique for each project: * (...) (goes on to list all dspace maven projects) In effort to investigate the problem, I put
Re: [Dspace-tech] DSpace 1.7.0 Maven 3.0.2 - DuplicateProjectException / Missing pom.xml properties
Mark, Excellent, thanks so much for the confirmation here. It wasn't a significant issue in that 2.2.1 worked fine, but I wanted to make sure that I wasn't missing anything for my tutorials / guides. Cheers - Patrick E. On Mon, Mar 7, 2011 at 3:16 PM, Mark Diggory mdigg...@atmire.com wrote: Patrick, this is a known issue with Maven 3, we are working on some project restructuring in DSpace trunk to alleviate this, for now, if you can build with the latest version of maven 2, that would be recommended. I think you can choose the maven installation in the m2eclipse plugin so you are not using the internal 3 version that comes with it. Likewise, if you want to build from /dspace/pom. you can drop the other module references in the dspace-parent pom by commenting them out. Mark On Mon, Mar 7, 2011 at 9:14 AM, Patrick Etienne patrick.etie...@library.gatech.edu wrote: Elliot (et al), Many thanks for the reply. You might have to say that I am both using and not using Eclipse, though the part where I am may be interfering with the part where I am not. I'm attempting to setup both a local development environment through Eclipse as well as a non-Eclipse (command-line) setup to mimic the development and production servers that my system administrator has setup (in effort to learn how best to streamline workflow for maintaining multiple instances). I'm going to briefly describe my setup in hopes that providing the info will help narrow down the difficulty (though it may just be trying to use Eclipse in tandem with the command line). Using Eclipse, I create a new (generic) project from svn and download the source to (rather than the regular workspace directory) my /usr/local/src directory (One-Big-Project approach, which may be a problem). From there I'll follow as updated instructions as I can from the Eclipse / DSpace setup wiki entry (including Enabled Nested Modules). From here I have all the other required dspace tools installed and the dspace.cfg configured etc. At this point I try running a Maven goal on the source directory as a test (mvn clean, for instance). I'll try running this same goal several ways, here are the results: Eclipse 3.6 (Helios) - Embedded Maven 3.0.2 - Fails Eclipse 3.6 (Helios) - External 3.0.2 - Fails Eclipse 3.6 (Helios) - External 2.2.1 - Succeeds Command Line - 3.0.2 - Fails Command Line - 2.2.1 - Succeeds My question at this point would be, is there something inherently different about downloading from svn to my source directory using the command line vs. performing the same operation through project creation from svn within Eclipse? Would attempting to Enable Dependency Management in Eclipse (or some other operation within the Eclipse / DSpace setup instructionshttps://wiki.duraspace.org/display/DSPACE/IDE+Integration+-+DSpace,+Eclipse+and+Tomcat#IDEIntegration-DSpace%2CEclipseandTomcat-WorkingwithDSpace1.5) taint the files in my source directory to the effect of having a Maven goal fail when run via the command line? All failures are the same error message. One significant thing I found interesting is that setting up one project per DSpace module would alleviate the referencing the same module within multiple pom.xml files problem (I think), due to them being separate projects rather than one big project. I did see that m2eclipse is behaving differently in the eclipse GUI due to some Eclipse API changes in 3.6 (run configurations, etc). I didn't realize that Enable Nested Modules wasn't supported in later versions, that may be the deal right there. As a general public FYI, it seems that m2eclipse (or like functionality) has been slated for core integration in 3.7 (due out June 22nd). That could be interesting. I think I'm going to try setting up DSpace from scratch all via command line into a different location, but I have the feeling that I'll still hit the same error. Elliot, again thanks for the reply. This has given me good food for thought and a way to continue trouble shooting. Cheers mate! If anyone else happens to have experience with similar issues, any tips or suggestions would be appreciated. - Patrick E. On Mon, Mar 7, 2011 at 10:43 AM, edawson edaw...@maf.org wrote: Hi Patrick, Are you using Eclipse? I was getting very similar errors when I didn’t have my projects set up correctly. I never had any trouble using Maven 3.02 via command line. With a bit of searching I found out it looks like the Maven option to “Enable Nested Modules” isn’t supported in the later versions of m2eclipse. So I set up one project per DSpace module and it all seemed to work. The m2eclipse dependency management then was able to correctly identify the modules as separate Java projects. I hope this helps (obviously not if you’re not using eclipse). Elliot *From:* Patrick Etienne [via DSpace] [mailto:[hidden email]http://user/SendEmail.jtp?type=nodenode=3339268i=0by-user=t] *Sent
[Dspace-tech] Item Mapper - Searching Issues
DSpace Tech(ies) - Here at Georgia Tech, we've recently launched our XMLUI as our primary and default interface for SMARTech (our institutional repository). One issue that has arisen concerns searching items within the Item Mapper section of the site. Searching on a single search term works as intended, but any strategy toward searching more than one term results in result strings like the following: search items matching: blah%20and%20foo for which, of course, there are no matches. I'm curious about whether other people are having similar issues with the XMLUI or whether perhaps we might have something configured improperly. I'm aware that %20 is the URI equivalent for a space, but I'm not sure what's going on in the background for the actual search. Any tips, hints, resources or suggestions on this issue would be greatly appreciated! - Patrick E. PS - My apologies if this email is a duplicate. I'd attempted to send this message out last week but didn't see it as a post from the list. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- Nokia and ATT present the 2010 Calling All Innovators-North America contest Create new apps games for the Nokia N8 for consumers in U.S. and Canada $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store http://p.sf.net/sfu/nokia-dev2dev ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] Stability of the Admin Functions for the XMLUI?
DSpace Techies / Devs - I have (what I hope might be) a quick question concerning the level of completion for the administrative functions for the XMLUI interface. My understanding is that there were still some significant options missing from the administration side of the xmlui during the 1.5.2 release. The question is, within version 1.6.2, are there any or many administrative functions that are available in the JSPUI but not present in the XMLUI? We have several institutions for which we're planning to launch xmlui interfaces and I wanted to try to get a feel for any differences in functionality between the two interfaces on that (administration) level. Any tips, hints, suggestions or resources would certainly be appreciated! - Patrick -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. Visit us here for more details: http://p.sf.net/sfu/dev2dev-palm___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] Manakin UI - International Date Format?
DSpace Community - I'm working with a manakin problem and was hoping the community might have some feedback related to the issue (it seems like it'd be a popular enough issue). The specific problem is that the dates being displayed within the mankin UI (for example, the browse by date page) are an all numeric u.s. format. Everything there is displaying properly, however because the format is all numeric, some dates could be considered ambiguous when comparing it to an international format. For example, there is a record with the date: 1911-12-01 this could be read as either December 1st, 1911 or January 12th, 1911. My question is, Is there something built into manakin that would allow for a more international display of dates? Or would this be something that I'd need to code in on an xslt level? Any tips, hints, suggestions, or resources would be greatly appreciated! - Patrick E. -- Patrick K. Etienne Systems Analyst Georgia Institute of Technology Library Information Center (404) 385-8121 -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
[Dspace-tech] Looking for Resources - Aspect Modification and the dim:
DSpace Users / Devs - (Wasn't sure for which list this would be more appropriate, apologies for cross-posting) We're looking to move our repository's production DSpace instance from the JSPUI to the XMLUI. I've been working with the Manakin interface for a while, but have hit a bit of a stumbling block with Aspects. Some of the requested changes seem to be more within the realms of the DIM-Handler.xsl or further back within the/an aspect's java code. All of the resources I've found for introductions to Aspect development are either too high level or just very outdated. I was hoping that members of the list might have recommendations for resources that would help in the effort of customizing the interface beyond what is available through overwriting existing xsl templates. An example customization might be: Moving the location in which Copyright and License appears on Community, Sub-Community, Collection, and Item pages. Let's say I want to move this to the bottom of the page, where at the moment it appears below the level (community, collection, item, etc) description but above other parts of the page (recent submissions, etc). The steps I've performed so far are: 1) Searched through files for the string Copyright and License which pulled up the messages.xml file. 2) Found the Copyright and License string as having the key xmlui.dri2xhtml.METS-1.0.copyright. 3) Searched the code for the xmlui.dri2xhtml.METS-1.0.copyright string, found within the DIM-Handler.xsl file. 4) Found two instances of the following template containing the xmlui.dri2xhtml.METS-1.0.copyright string: xsl:template match=dim:dim mode=collectionDetailView-DIM 5) This template is not named, so cannot be called specifically from a parent template. This would seem to say that the rendering order of the html is based upon something other than directives found within the xsl transformations. The template is matching dim:dim which seems to indicate that there's a secondary DRI (for lack of a better description) whose elements I might want to reorder toward the goal of having these elements displayed in non-standard rendering order in the final html page. In the structural.xsl, the prefix dri: is used, where in the DIM- Handler.xsl the prefix dim: is used. This seems to support the notion that there's another dri-like xml document in the cocoon chain that's helping to build the final output. Two things I'd be very interested in are: A) Resources I could use to read up about the dim: part of the pipeline. B) Resources that might provide insight into how to manipulate existing Aspects. I'm familiar with pre-2.2 Cocoon (before the spring/maven foundation was implemented) and related concepts (sitemaps, selectors, matchers, generators, etc). My educated guess is that my next step along the journey is to trace the Artifact Browser aspect from the sitemap through the cocoon pipeline back all the way to the underlying java code and just explore. Any tips, hints, suggestions, or resources though would be highly appreciated! - Patrick E. --- Patrick K. Étienne Systems Analyst Library and Information Center Georgia Institute of Technology email: patrick.etie...@library.gatech.edu phone: 404.385.8121 Mediocre Writers Borrow; Great Writers Steal - T.S. Eliot -- ___ DSpace-tech mailing list DSpace-tech@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/dspace-tech
Re: [Dspace-tech] [Dspace-general] Manakin Theme - Heading Font Sizes (XSL)
Many Thanks for the references!
- Patrick E.
---
Patrick K. Étienne
Systems Analyst
Library and Information Center
Georgia Institute of Technology
email: patrick.etie...@library.gatech.edu
phone: 404.385.8121
Mediocre Writers Borrow; Great Writers Steal - T.S. Eliot
On Mar 9, 2010, at 1:29 AM, Hilton Gibson wrote:
PS: See: http://scholar.sun.ac.za/
On Mon, Mar 8, 2010 at 10:55 PM, Patrick Etienne
patrick.etie...@library.gatech.edu wrote:
DSpace Users,
I'm attempting to modify font sizes for the page headings (ie - h1/
tags
etc). There is a utility programmed into the structural.xsl
stylesheet which
purports to build these tags at appropriate sizes based on content
(see
template).
(code from DSpace 1.5.2)
xsl:template match=dri:div/dri:head priority=3
xsl:variable name=head_count
select=count(ancestor::dri:div)/
!-- with the help of the font-sizing variable, the font-
size of our
header text is made continuously variable based on the character
count --
xsl:variable name=font-sizing select=365 - $head_count
* 80 -
string-length(current())/xsl:variable
xsl:element name=h{$head_count}
!-- in case the chosen size is less than 120%, don't
let it go
below. Shrinking stops at 120% --
xsl:choose
xsl:when test=$font-sizing lt; 120
xsl:attribute name=stylefont-size:
120%;/xsl:attribute
/xsl:when
xsl:otherwise
xsl:attribute name=stylefont-size: xsl:value-of
select=$font-sizing/%;/xsl:attribute
/xsl:otherwise
/xsl:choose
xsl:call-template name=standardAttributes
xsl:with-param name=classds-div-head/xsl:with-
param
/xsl:call-template
xsl:apply-templates /
/xsl:element
/xsl:template
The problem I'm having is that regardless of edits I do to this
template,
the font sizes always come out to 252%. The mystifying part is that
the
resulting html tags contain a ds-div-head class and looking this
class up
in the xsl yields only one result. Specifically the reference
contained in
the above template. My question is, if the above template is the
only source
for a ds-div-head class, and the template is commented out
altogether, but
the style still comes out as a font-size of 252%, from where is
this styling
directive coming? Or if I've somehow missed the actual source of
the 252%
font-sizing, where else might it be coming from?
- Patrick E.
---
Patrick K. Étienne
Systems Analyst
Library and Information Center
Georgia Institute of Technology
email: patrick.etie...@library.gatech.edu
phone: 404.385.8121
Mediocre Writers Borrow; Great Writers Steal - T.S. Eliot
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http://scholar.sun.ac.za
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[Dspace-tech] Manakin Theme - Heading Font Sizes (XSL)
DSpace Users,
I'm attempting to modify font sizes for the page headings (ie - h1/
tags etc). There is a utility programmed into the structural.xsl
stylesheet which purports to build these tags at appropriate sizes
based on content (see template).
(code from DSpace 1.5.2)
xsl:template match=dri:div/dri:head priority=3
xsl:variable name=head_count
select=count(ancestor::dri:div)/
!-- with the help of the font-sizing variable, the font-size
of our header text is made continuously variable based on the
character count --
xsl:variable name=font-sizing select=365 - $head_count *
80 - string-length(current())/xsl:variable
xsl:element name=h{$head_count}
!-- in case the chosen size is less than 120%, don't let
it go below. Shrinking stops at 120% --
xsl:choose
xsl:when test=$font-sizing lt; 120
xsl:attribute name=stylefont-size: 120%;/
xsl:attribute
/xsl:when
xsl:otherwise
xsl:attribute name=stylefont-size: xsl:value-
of select=$font-sizing/%;/xsl:attribute
/xsl:otherwise
/xsl:choose
xsl:call-template name=standardAttributes
xsl:with-param name=classds-div-head/xsl:with-
param
/xsl:call-template
xsl:apply-templates /
/xsl:element
/xsl:template
The problem I'm having is that regardless of edits I do to this
template, the font sizes always come out to 252%. The mystifying part
is that the resulting html tags contain a ds-div-head class and
looking this class up in the xsl yields only one result. Specifically
the reference contained in the above template. My question is, if the
above template is the only source for a ds-div-head class, and the
template is commented out altogether, but the style still comes out as
a font-size of 252%, from where is this styling directive coming? Or
if I've somehow missed the actual source of the 252% font-sizing,
where else might it be coming from?
- Patrick E.
---
Patrick K. Étienne
Systems Analyst
Library and Information Center
Georgia Institute of Technology
email: patrick.etie...@library.gatech.edu
phone: 404.385.8121
Mediocre Writers Borrow; Great Writers Steal - T.S. Eliot
--
Download Intel#174; Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
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[Dspace-tech] DSpace 1.5.2 - Embargo patch issue
Fellow DSpace Techs -
I'm attempting to get the embargo patch working against a fresh
installation of dspace 1.5.2 per the instructions available at the
following URL:
http://wiki.dspace.org/index.php/User:Emetsger:Embargo:Downloads_here
Despite my best efforts, I am not able to set this up successfully.
After installing and looking at the results the symptoms are as follows:
1) Visual - I see inline bullet points but no text associated with them.
2) XHTML - yields the code listed below for each community/collection:
!-- External Metadata URL: cocoon://metadata/handle/{community
number}/{collection number}/mets.xml?
sections=dmdSec,fileSecfileGrpTypes=THUMBNAIL--
li class=ds-artifact-item {even/odd} /
3) JSPUI - shows up as expected with all communities / collections
listed.
It feels as though the xmlui portion of the patch is not being applied
properly. This is just a guess, but an educated one in that the jspui
works fine after the fresh install with the patch and sql schema patch
applied, whereas the xmlui does not. However, patching the code does
yield a several results as far as files patched which have xmlui as
a directory in the patched files' paths.
To make this even stranger an issue, I would swear that the first time
I tried doing a fresh install with the embargo patch, that it did
actually work. I say this because I was able to navigate to an embargo
tab using the administration user.
As another significant note, I also tried installing a fresh instance,
replacing the database with an instance of a production dspace (1.5.2)
database (vast amounts of data), then amending the database schema for
that database instance with the code included in the embargo patch.
The same results occurred. The JSPUI showed the content as expected,
but the xhtml code was full of empty li/ elements, one for each of
the communities/collections that should have been display but were not
from the xmlui.
Any tips, hints, or suggestions on this issue would greatly be
appreciated!
- Patrick E.
---
Patrick K. Étienne
Systems Analyst
Library and Information Center
Georgia Institute of Technology
email: patrick.etie...@library.gatech.edu
phone: 404.385.8121
Mediocre Writers Borrow; Great Writers Steal - T.S. Eliot
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