Re: [Fink-users] failed to install apbs
Really sorry, but it didn't work for me... even after a fresh install. # # make install DESTDIR=%d # install it ourselves: mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin cp bin/apbs bin/ApbsClient.py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/. echo '#!/sw/bin/python2.6' | /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo from ZSI.generate.commands import wsdl2py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo wsdl2py() /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py chmod a+x /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs cp -r examples /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r tools /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc ln -s /sw/share/apbs/doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc/apbs # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ZSI cp -r contrib/opal/ZSI/ZSI/* /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ZSI/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs cp **/*.h /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/. cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc.h' with `contrib/maloc/src/aaa_inc/maloc/maloc.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc_base.h' with `contrib/maloc/src/aaa_inc/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/aaa_inc/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/aaa_inc/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/aaa_inc/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/aaa_inc/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/aaa_inc/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/aaa_inc/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/aaa_inc/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/aaa_inc/maloc/vset.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/aaa_inc/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsys.h' with `contrib/maloc/src/aaa_inc/maloc/vsys.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc_base.h' with `contrib/maloc/src/base/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/psh/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/psh/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/psh/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/psh/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/vsh/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/vsys/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/vsys/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/vsys/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/vsys/maloc/vset.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsys.h' with `contrib/maloc/src/vsys/maloc/vsys.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./efence.h' with `contrib/maloc/tools/tests/zfence/efence.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcsm.h' with `src/fem/apbs/vcsm.h' cp: will not overwrite
Re: [Fink-users] failed to install apbs
And I know why: where just 'cp' replace with '/bin/cp'. I guess I had problem because I use package 'coreutils' Many thansk William! Cheers, Alan On Sun, Aug 2, 2009 at 12:13, Alan alanwil...@gmail.com wrote: Really sorry, but it didn't work for me... even after a fresh install. # # make install DESTDIR=%d # install it ourselves: mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin cp bin/apbs bin/ApbsClient.py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/. echo '#!/sw/bin/python2.6' | /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo from ZSI.generate.commands import wsdl2py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo wsdl2py() /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py chmod a+x /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs cp -r examples /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r tools /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc ln -s /sw/share/apbs/doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc/apbs # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ZSI cp -r contrib/opal/ZSI/ZSI/* /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ZSI/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs cp **/*.h /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/. cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc.h' with `contrib/maloc/src/aaa_inc/maloc/maloc.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc_base.h' with `contrib/maloc/src/aaa_inc/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/aaa_inc/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/aaa_inc/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/aaa_inc/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/aaa_inc/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/aaa_inc/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/aaa_inc/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/aaa_inc/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/aaa_inc/maloc/vset.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/aaa_inc/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsys.h' with `contrib/maloc/src/aaa_inc/maloc/vsys.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc_base.h' with `contrib/maloc/src/base/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/psh/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/psh/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/psh/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/psh/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/vsh/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/vsys/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/vsys/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/vsys/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/vsys/maloc/vset.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsys.h' with
Re: [Fink-users] Error building gcc42-shlibs
On 01/08/2009, at 23:56, Jack Howarth wrote: On Sat, Aug 01, 2009 at 09:00:07PM -0500, Peter O'Gorman wrote: Martin Costabel wrote: I guess pogma needs to add another patch for autoconf-2.64. Or Fink needs to go back to autoconf-2.63. Well, gcc requires the use of specific, non-vendor patched versions of the autotools, the version of autoconf currently required is 2.59. Using any other version to autoreconf gcc is problematic. Ralf, Paolo etc are working on updating gcc's autoconf to 2.64 for gcc-4.5.x. Still, I hope that the use of undocumented m4 sugar and autoconf macros in the wild is minimal. I am still willing to revert the autoconf package to 2.63 and increment the epoch, I am not willing to patch autoconf to keep previous behaviour for m4_copy and m4_rename just for the gcc42 package though. Martin, in your opinion is the new autoconf package too incompatible to keep being named 'autoconf'? Peter -- Peter O'Gorman http://pogma.com Peter, I am in the process of checking in new gcc42-4.2.4-1000 info and patch files which backports the same configure support for --disable- libjava-multilib so that regeneration of the configure files can be avoided. I have been using this approach in gcc43 and gcc44 but never backported it to gcc42. Jack Revision 1001 builds/installs on Intel 10.5.7, Xcode 3.1.3, 32-bit Fink. If GCC needs a specific version of autoconf then avoiding reconfiguration altogether looks like a robust (and possibly the best) solution. Cheers, -- monipol http://finkers.wordpress.com Submitting a Fink bug report? Read this: http://www.finkproject.org/doc/netiquette/index.php http://finkers.wordpress.com/2009/06/03/bug-reports/ -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Error building gcc42-shlibs
On 2/8/09 13:07, monipol wrote: Revision 1001 builds/installs on Intel 10.5.7, Xcode 3.1.3, 32-bit Fink. Yes, builds OK with Xcode 3.1.4 (3.1b3) on same. Thanks, Mike -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] failed to install apbs
OK, I will fix it. corutils is always full of surprises. On Aug 2, 2009, at 4:23 AM, Alan wrote: And I know why: where just 'cp' replace with '/bin/cp'. I guess I had problem because I use package 'coreutils' Many thansk William! Cheers, Alan On Sun, Aug 2, 2009 at 12:13, Alan alanwil...@gmail.com wrote: Really sorry, but it didn't work for me... even after a fresh install. # # make install DESTDIR=%d # install it ourselves: mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin cp bin/apbs bin/ApbsClient.py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/. echo '#!/sw/bin/python2.6' | /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo from ZSI.generate.commands import wsdl2py /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py echo wsdl2py() /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py chmod a+x /sw/src/fink.build/root-apbs-1.1.0-4/sw/bin/wsdl2py # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs cp -r examples /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r tools /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. cp -r doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/apbs/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc ln -s /sw/share/apbs/doc /sw/src/fink.build/root-apbs-1.1.0-4/sw/share/doc/apbs # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ ZSI cp -r contrib/opal/ZSI/ZSI/* /sw/src/fink.build/root-apbs-1.1.0-4/sw/lib/python2.6/site-packages/ ZSI/. # mkdir -p /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs cp **/*.h /sw/src/fink.build/root-apbs-1.1.0-4/sw/include/ apbs/. cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./maloc.h' with `contrib/maloc/src/aaa_inc/maloc/maloc.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./ maloc_base.h' with `contrib/maloc/src/aaa_inc/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/aaa_inc/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/aaa_inc/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/aaa_inc/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/aaa_inc/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/aaa_inc/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/aaa_inc/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/aaa_inc/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/aaa_inc/maloc/vset.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/aaa_inc/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsys.h' with `contrib/maloc/src/aaa_inc/maloc/vsys.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./ maloc_base.h' with `contrib/maloc/src/base/maloc/maloc_base.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./psh.h' with `contrib/maloc/src/psh/maloc/psh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vcom.h' with `contrib/maloc/src/psh/maloc/vcom.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmp.h' with `contrib/maloc/src/psh/maloc/vmp.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmpi.h' with `contrib/maloc/src/psh/maloc/vmpi.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vsh.h' with `contrib/maloc/src/vsh/maloc/vsh.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vio.h' with `contrib/maloc/src/vsys/maloc/vio.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vmem.h' with `contrib/maloc/src/vsys/maloc/vmem.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vnm.h' with `contrib/maloc/src/vsys/maloc/vnm.h' cp: will not overwrite just-created `/sw/src/fink.build/root-apbs-1.1.0-4/sw/include/apbs/./vset.h' with `contrib/maloc/src/vsys/maloc/vset.h' cp: will not
[Fink-users] Fink: Missing dependency in clamav-0.95.2-21 on libtool2-shlibs
Fink 0.29.7; MacOS 10.5.7 i386; tracking unstable. I've just stumbled across what appears to be a missing dependency in clamav-0.95.2-21. I did a fink selfupdate; fink update-all; debfoster yesterday. After the debfoster, running freshclam fails: [perdita:~]$ sudo freshclam Password: dyld: Library not loaded: /sw/lib/libltdl.7.dylib Referenced from: /sw/bin/freshclam Reason: image not found Trace/BPT trap After some digging, I discovered that the missing library is in package libtool2-shlibs. After installing this, freshclam runs successfully. (Maintainer CC'd.) Thanks, Richard -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
