Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-31 Thread Jean-François Mertens

On 31 Mar 2008, at 15:55, Ben Abbott wrote:
> Back the the problem with Octave-atlas, I tried to build on my ppc
> based Mac, but the build of atlas failed.
> Is this a known problem on ppc (10.5) or shall I start a new thread?

Not on ppc _ on G4.
Sure _ there are threads about it; cf also last sentence of DescPort.

JF Mertens

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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-31 Thread Ben Abbott
On Mar 31, 2008, at 9:17 AM, Alexander K. Hansen wrote:
> On Monday 31 March 2008 07:19:05 am Ben Abbott wrote:
>> Yann Clénet  free.fr> writes:
>>> actually, I was trying to install the gdl package and it failed at  
>>> the
>>> octave-atlas step. but if I can be of any help (I am rather a newbie
>>> than an expert of fink...), I can try any suggestion
>>>
>>> Yann
>>
>> hmmm... looking at the dependencies for gdl, I don't see why
>> octave-atlas is needed. Alexander/JF should be more help with
>> that.
>>
>> Regarding octave-atlas, you might try installing octave instead.
>> Please start by replacing the "make check" line in octave.info and
>> then
>>
>> $ fink remove octave-atlas
>> $ fink install octave
>> $ fink install gdl
>>
>> On both my Intel and PPC based Macs "fink install octave" works
>> for me ... I haven't tried to install gdl.
>>
> I was surprised when encountered this myself.  gdl depends on plplot  
> which
> depends on octave | octave-atlas

Sounds like good news for Yann. If he chooses to install octave  
instead of octave-atlas, he should have a functional gdl.

Back the the problem with Octave-atlas, I tried to build on my ppc  
based Mac, but the build of atlas failed.  Some of what I encountered  
is below.

$ fink install atlas atlas-shlibs

[...]

gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.8.1-1/bld/include -I/ 
sw/s
 rc/fink.build/atlas-3.8.1-1/bld/../ATLAS//include -I/sw/src/ 
fink.build/atla
 s-3.8.1-1/bld/../ATLAS//include/contrib -DAdd_ -DF77_INTEGER=int - 
DStringSu
 nStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 -DATL_CPUMHZ=1499 - 
DATL_AltiVec -DATL_
 GAS_PPC  -O3 -maltivec -mabi=altivec -mcpu=7400 -mtune=7400 -no- 
cpp-precomp
  -faltivec -m32 -DATL_BETA=1 -c cmm_b1.c
gcc: unrecognized option '-no-cpp-precomp'
cmm_b1.c: In function 'ATL_cJIK80x80x80TN80x80x0_a1_b1':
cmm_b1.c:147: error: can't convert value to a vector
cmm_b1.c:153: warning: use of 'long' in AltiVec types is deprecated;  
use 'int'
cmm_b1.c:153: error: can't convert between vector values of different  
size
make[6]: *** [cBuildCobjs] Error 1
make[5]: *** [cmmucase] Error 2

[... snip ...]

gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.8.1-1/bld/include -I/ 
sw/s
 rc/fink.build/atlas-3.8.1-1/bld/../ATLAS//include -I/sw/src/ 
fink.build/atla
 s-3.8.1-1/bld/../ATLAS//include/contrib -DAdd_ -DF77_INTEGER=int - 
DStringSu
 nStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 -DATL_CPUMHZ=1499 - 
DATL_AltiVec -DATL_
 GAS_PPC  -DATL_UCLEANM -DATL_UCLEANN -DATL_UCLEANK -O3 -maltivec - 
mabi=alti
 vec -mcpu=7400 -mtune=7400 -no-cpp-precomp -faltivec -m32 -c  
ATL_cupMBmm0_1
 _0_b0.c
gcc: unrecognized option '-no-cpp-precomp'
ATL_cupMBmm0_1_0_b0.c:82:1: warning: "ATL_AltiVec" redefined
: warning: this is the location of the previous definition
ATL_cupMBmm0_1_0_b0.c: In function 'ATL_mmcu':
ATL_cupMBmm0_1_0_b0.c:131: error: can't convert value to a vector
ATL_cupMBmm0_1_0_b0.c: In function 'ATL_cupMBmm0_1_0_b0':
ATL_cupMBmm0_1_0_b0.c:212: error: can't convert value to a vector
ATL_cupMBmm0_1_0_b0.c:219: warning: use of 'long' in AltiVec types is  
deprecated; use 'int'
ATL_cupMBmm0_1_0_b0.c:219: error: can't convert between vector values  
of different size
make[8]: *** [ATL_cupMBmm0_1_0_b0.o] Error 1
make[7]: *** [ccleanuplib] Error 2
make[6]: *** [clib] Error 2
make[5]: *** [cmmlib] Error 2
make[4]: *** [cinstall] Error 2
make[3]: *** [install] Error 2
make[2]: *** [IRunMMDef] Error 2

[...]

Is this a known problem on ppc (10.5) or shall I start a new thread?

Ben



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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-31 Thread Jean-Francois Mertens
Alexander Hansen wrote:

> It might be of interest to try the suitesparse on the tracker (I'm  
> working my way to it).

Same _ no problem here with "fink -m rebuild octave-atlas"

JF

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Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed

2008-03-31 Thread Alexander K. Hansen
On Monday 31 March 2008 07:19:05 am Ben Abbott wrote:
> Yann Clénet  free.fr> writes:
> > actually, I was trying to install the gdl package and it failed at the
> > octave-atlas step. but if I can be of any help (I am rather a newbie
> > than an expert of fink...), I can try any suggestion
> >
> > Yann
>
> hmmm... looking at the dependencies for gdl, I don't see why
> octave-atlas is needed. Alexander/JF should be more help with
> that.
>
> Regarding octave-atlas, you might try installing octave instead.
> Please start by replacing the "make check" line in octave.info and
> then
>
> $ fink remove octave-atlas
> $ fink install octave
> $ fink install gdl
>
> On both my Intel and PPC based Macs "fink install octave" works
> for me ... I haven't tried to install gdl.
>
>
>
>

I was surprised when encountered this myself.  gdl depends on plplot which 
depends on octave | octave-atlas
-- 
Alexander K. Hansen
akh AT finkproject DOT org
Fink User Liaison and Documenter

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Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed

2008-03-31 Thread Ben Abbott
Yann Clénet  free.fr> writes:

> 
> actually, I was trying to install the gdl package and it failed at the  
> octave-atlas step. but if I can be of any help (I am rather a newbie  
> than an expert of fink...), I can try any suggestion
> 
> Yann

hmmm... looking at the dependencies for gdl, I don't see why
octave-atlas is needed. Alexander/JF should be more help with
that.

Regarding octave-atlas, you might try installing octave instead.
Please start by replacing the "make check" line in octave.info and
then

$ fink remove octave-atlas
$ fink install octave
$ fink install gdl

On both my Intel and PPC based Macs "fink install octave" works 
for me ... I haven't tried to install gdl.






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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-31 Thread Yann Clénet
actually, I was trying to install the gdl package and it failed at the  
octave-atlas step. but if I can be of any help (I am rather a newbie  
than an expert of fink...), I can try any suggestion

Yann


>> Segfaults are hard to diagnose (remember the last one
>> about octave-forge, Ben ..)
>> And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/ 
>> pcg.m)
>> is in the "sparse" directory, and contains several refs to sparsity;
>> suitesparse might not be involved ??
>>
>> JF
>
> It is possible. If Yann is up to the task of helping isolate the  
> problem, we can have him run
>
> > test pcg verbose
>
> That should tell us what test is actually failing. I suspect the  
> left-divide because that problem has already been identified.  
> However, I'm confused as to why Yann is encountering it ... unless  
> he is using Octave's developer sources form Feb to the mid-Mar.
>
> Ben
>
>
>


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Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed

2008-03-30 Thread Ben Abbott
Alexander Hansen  gmail.com> writes:
> 
> It might be of interest to try the suitesparse on the tracker (I'm  
> working my way to it).
> 
> I can't check this myself because atlas won't build on my machine,  
> unfortunately.

Alex,

Sorry for the delay, I just noticed your follow up.

I tried to build "octave-atlas" using the SuiteSpares 3.1, and it failed
just as Yann's build did.

Ben


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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-30 Thread Ben Abbott
On Mar 27, 2008, at 1:44 PM, Yann Clénet wrote:
>
>
>>
>> I believe this problem has been fixed in Octave's current developer
>> sources, which I'm currently running.
>>
>> The problem is related to a change in how gfortran returns values of
>> complex functions.
>>
>> If you edit octave.info and remove the line "make check", it should  
>> build
>> and install. If my inference is correct, the following should  
>> reproduce the
>> crash
>>
>>> N = 97;
>>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
>>
>> For N < 97 it should work (if you build without "make check", please
>> confirm).
>>
>> I'm surprised this error is resulting with the atlas version. When  
>> did you
>> build altas?
>>
>> Perhaps you might try "fink rebuild atlas atlas-shlibs" before  
>> building
>> octave-atlas. That way you can be sure that blas/lapack/octave are
>> each compiled in a consistent manner.
>>
>> Ben
>
> I have tried your "fink rebuild atlas atlas-shlibs" (with no error)  
> and then tried again to install octave-atlas, but got the same error  
> as before...
>
> But after suppressing "make check" in  the /sw/fink/10.4/unstable/ 
> main/finkinfo/sci/octave.info file, the installation of octave-atlas  
> worked fine.
> Thank you !
>
> Yann

Yann,

Any chance you tried to build octave, with out altas?

If so what was the result?

Ben



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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-28 Thread Ben Abbott

On Mar 27, 2008, at 11:57 PM, Jean-Francois Mertens wrote:
> Ben Abbott wrote:
>> Yann Clénet  free.fr> writes:
>>> I have now a problem installing with fink the package octave-atlas  
>>> on  my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below).
>>>
>>> Yann
>>>
>> The problem is related to a change in how gfortran returns values  
>> of complex functions.
> >
> > I'm surprised this error is resulting with the atlas version.
> > When did you build altas?
> Rather : version and revision ?
>
> >
> Indeed, it should not occur, and does not here
> (with a "stock" octave-atlas)
>
>> If you edit octave.info and remove the line "make check",
> Was done by the maintainer now...
> (I prefer to have signals of problems than to hide them,
> but most users probably don't...)
>
>>> N = 97;
>>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
> This too works perfectly here with a "stock" octave-atlas.
>
> Segfaults are hard to diagnose (remember the last one
> about octave-forge, Ben ..)
> And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m)
> is in the "sparse" directory, and contains several refs to sparsity;
> suitesparse might not be involved ??
>
> JF

It is possible. If Yann is up to the task of helping isolate the  
problem, we can have him run

 > test pcg verbose

That should tell us what test is actually failing. I suspect the left- 
divide because that problem has already been identified. However, I'm  
confused as to why Yann is encountering it ... unless he is using  
Octave's developer sources form Feb to the mid-Mar.

Ben




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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-27 Thread Alexander Hansen

On Mar 27, 2008, at 11:57 PM, Jean-Francois Mertens wrote:

> Ben Abbott wrote:
>> Yann Clénet  free.fr> writes:
>>
>>> I have now a problem installing with fink the package octave-atlas  
>>> on
>>> my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below).
>>>
>>> Yann
>>>
>>
>> The problem is related to a change in how gfortran returns values of
>> complex functions.
>>
>> I'm surprised this error is resulting with the atlas version.
>> When did you build altas?
> Rather : version and revision ?
>
>>
> Indeed, it should not occur, and does not here
> (with a "stock" octave-atlas)
>
>>
>> If you edit octave.info and remove the line "make check",
> Was done by the maintainer now...
> (I prefer to have signals of problems than to hide them,
> but most users probably don't...)
>
>>
>>> N = 97;
>>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
>>
> This too works perfectly here with a "stock" octave-atlas.
>
> Segfaults are hard to diagnose (remember the last one
> about octave-forge, Ben ..)
> And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m)
> is in the "sparse" directory, and contains several refs to sparsity;
> suitesparse might not be involved ??
>
> JF
>

"make test" is still available under maintainer mode for those who  
want it.

It might be of interest to try the suitesparse on the tracker (I'm  
working my way to it).

I can't check this myself because atlas won't build on my machine,  
unfortunately.
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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-27 Thread Jean-Francois Mertens
Ben Abbott wrote:
> Yann Clénet  free.fr> writes:
> 
>> I have now a problem installing with fink the package octave-atlas on  
>> my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below).
>>
>> Yann
>>
> 
> The problem is related to a change in how gfortran returns values of 
> complex functions.
 >
 > I'm surprised this error is resulting with the atlas version.
 > When did you build altas?
Rather : version and revision ?

 >
Indeed, it should not occur, and does not here
(with a "stock" octave-atlas)

> 
> If you edit octave.info and remove the line "make check",
Was done by the maintainer now...
(I prefer to have signals of problems than to hide them,
but most users probably don't...)

> 
>> N = 97;
>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
> 
This too works perfectly here with a "stock" octave-atlas.

Segfaults are hard to diagnose (remember the last one
about octave-forge, Ben ..)
And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m)
is in the "sparse" directory, and contains several refs to sparsity;
suitesparse might not be involved ??

JF

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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-27 Thread Ben Abbott

On Mar 27, 2008, at 1:44 PM, Yann Clénet wrote:
>
>
>>
>> I believe this problem has been fixed in Octave's current developer
>> sources, which I'm currently running.
>>
>> The problem is related to a change in how gfortran returns values of
>> complex functions.
>>
>> If you edit octave.info and remove the line "make check", it should  
>> build
>> and install. If my inference is correct, the following should  
>> reproduce the
>> crash
>>
>>> N = 97;
>>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
>>
>> For N < 97 it should work (if you build without "make check", please
>> confirm).
>>
>> I'm surprised this error is resulting with the atlas version. When  
>> did you
>> build altas?
>>
>> Perhaps you might try "fink rebuild atlas atlas-shlibs" before  
>> building
>> octave-atlas. That way you can be sure that blas/lapack/octave are
>> each compiled in a consistent manner.
>>
>> Ben

> I have tried your "fink rebuild atlas atlas-shlibs" (with no error)  
> and then tried again to install octave-atlas, but got the same error  
> as before...
>
> But after suppressing "make check" in  the /sw/fink/10.4/unstable/ 
> main/finkinfo/sci/octave.info file, the installation of octave-atlas  
> worked fine.
> Thank you !
>
> Yann

It is likely that a crash will still occur with

>>> N = 97;
>>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));


The next release of Octave will include a fix.

Ben
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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-27 Thread Yann Clénet
I have tried your "fink rebuild atlas atlas-shlibs" (with no error)  
and then tried again to install octave-atlas, but got the same error  
as before...

But after suppressing "make check" in  the /sw/fink/10.4/unstable/main/ 
finkinfo/sci/octave.info file, the installation of octave-atlas worked  
fine.
Thank you !

Yann

>
> I believe this problem has been fixed in Octave's current developer
> sources, which I'm currently running.
>
> The problem is related to a change in how gfortran returns values of
> complex functions.
>
> If you edit octave.info and remove the line "make check", it should  
> build
> and install. If my inference is correct, the following should  
> reproduce the
> crash
>
>> N = 97;
>> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));
>
> For N < 97 it should work (if you build without "make check", please
> confirm).
>
> I'm surprised this error is resulting with the atlas version. When  
> did you
> build altas?
>
> Perhaps you might try "fink rebuild atlas atlas-shlibs" before  
> building
> octave-atlas. That way you can be sure that blas/lapack/octave are
> each compiled in a consistent manner.
>
> Ben

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Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-27 Thread Ben Abbott
Yann Clénet  free.fr> writes:

> 
> I have now a problem installing with fink the package octave-atlas on  
> my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Anyone  
> has any idea ???
> 
> Thank you in advance
> 
> Yann
> 

I believe this problem has been fixed in Octave's current developer
sources, which I'm currently running.

The problem is related to a change in how gfortran returns values of 
complex functions.

If you edit octave.info and remove the line "make check", it should build 
and install. If my inference is correct, the following should reproduce the
crash

> N = 97;
> mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1));

For N < 97 it should work (if you build without "make check", please
confirm).

I'm surprised this error is resulting with the atlas version. When did you 
build altas?

Perhaps you might try "fink rebuild atlas atlas-shlibs" before building 
octave-atlas. That way you can be sure that blas/lapack/octave are 
each compiled in a consistent manner.

Ben


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[Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed

2008-03-26 Thread Yann Clénet
I have now a problem installing with fink the package octave-atlas on  
my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Anyone  
has any idea ???

Thank you in advance

Yann

--

Octave successfully built.  Now choose from the following:

./run-octave- to run in place to test before installing
make check  - to run the tests
make install- to install

  make check
make -f octMakefile check
make -C test check
./build_sparse_tests.sh
../run-octave --norc --silent --no-history ./fntests.m .

Integrated test scripts:

   src/DLD-FUNCTIONS/bsxfun.cc  PASS   55/55
   src/DLD-FUNCTIONS/cellfun.cc ... PASS   31/31
   src/DLD-FUNCTIONS/conv2.cc . PASS1/1
   src/DLD-FUNCTIONS/dispatch.cc .. PASS   13/13
   src/DLD-FUNCTIONS/fft.cc ... PASS9/9
   src/DLD-FUNCTIONS/fsolve.cc  PASS4/4
   src/DLD-FUNCTIONS/luinc.cc . PASS2/2
   src/DLD-FUNCTIONS/matrix_type.cc ... PASS   51/51
   src/DLD-FUNCTIONS/rand.cc .. PASS   57/57
   src/DLD-FUNCTIONS/regexp.cc  PASS   81/81
   src/DLD-FUNCTIONS/spkron.cc  PASS2/2
   src/DLD-FUNCTIONS/spqr.cc .. PASS   14/14
   src/DLD-FUNCTIONS/tsearch.cc ... PASS6/6
   src/data.cc  PASS   20/20
   src/ov-fcn-handle.cc ... PASS3/3
   src/ov-struct.cc ... PASS   15/15
   src/pt-idx.cc .. PASS5/5
   src/strfns.cc .. PASS   22/22
   src/syscalls.cc  PASS1/1
   liboctave/CMatrix.cc ... PASS6/6
   liboctave/dMatrix.cc ... PASS6/6
   scripts/audio/wavwrite.m ... PASS3/3
   scripts/elfun/acosd.m .. PASS3/3
   scripts/elfun/acotd.m .. PASS3/3
   scripts/elfun/acscd.m .. PASS3/3
   scripts/elfun/asecd.m .. PASS3/3
   scripts/elfun/asind.m .. PASS3/3
   scripts/elfun/atand.m .. PASS3/3
   scripts/elfun/cosd.m ... PASS5/5
   scripts/elfun/cotd.m ... PASS5/5
   scripts/elfun/cscd.m ... PASS5/5
   scripts/elfun/secd.m ... PASS5/5
   scripts/elfun/sind.m ... PASS5/5
   scripts/elfun/tand.m ... PASS5/5
   scripts/general/__isequal__.m .. PASS   26/26
   scripts/general/accumarray.m ... PASS   11/11
   scripts/general/arrayfun.m . PASS1/1
   scripts/general/bitcmp.m ... PASS   15/15
   scripts/general/blkdiag.m .. PASS8/8
   scripts/general/cell2mat.m . PASS2/2
   scripts/general/cplxpair.m . PASS   13/13
   scripts/general/cumtrapz.m . PASS6/6
   scripts/general/deal.m . PASS2/2
   scripts/general/interp1.m .. PASS   
144/144
   scripts/general/interp2.m .. PASS6/6
   scripts/general/interp3.m .. PASS1/1
   scripts/general/interpft.m . PASS5/5
   scripts/general/issymmetric.m .. PASS   12/12
   scripts/general/lookup.m ... PASS   13/13
   scripts/general/mod.m .. PASS   18/18
   scripts/general/nthroot.m .. PASS3/3
   scripts/general/polyarea.m . PASS4/4
   scripts/general/repmat.m ... PASS   16/16
   scripts/general/structfun.m  PASS1/1
   scripts/general/sub2ind.m .. PASS   24/24
   scripts/general/trapz.m  PASS6/6
   scripts/geometry/convhull.m  PASS1/1
   scripts/geometry/delaunay.m  PASS1/1
   scripts/geometry/delaunay3.m ... PASS1/1
   scripts/geometry/dsearch.m . PASS2/2
   scripts/geometry/dsearchn.m  PASS