Re: [galaxy-dev] Refreshing/Reloading Files
Hi Paul Please keep all replies on the list by using reply all A simple solution, which we use quite a lot, is the following: we use the dynamic_options attribute, eg: inputs param name=foo type=select label=what help=Use tickboxes to select display=radio dynamic_options=ds_fooOptions()/ /inputs outputs data format=fasta name=output label=more foo / /outputs code file=extra_code_for_foo_list.py / help /help /tool and then we have a little python script (extra_code_for_foo_list.py) with the ds_fooOptions function, which can read your file (ie your list of databases), eg def ds_fooOptions(): List available foos as tuples of (displayName,value) foos = whatever python code is required to generate the tuples return foos I hope this helps, Hans On 06/29/2011 08:09 PM, Admins de Galaxy wrote: Hi Hans, yes that's it. We are offering the list of databases as options to select in the GUI, before executing the script which compares the selected database with the sequence. Paul 2011/6/29 Hans-Rudolf Hotzh...@fmi.ch Hi Paul You probably need to be a bit more specific...at what stage is this '.txt file' read (or rather should be read)? - are you offering the (growing) list of databases as options to select in the GUI? Hans On 06/29/2011 10:20 AM, Admins de Galaxy wrote: Hello everyone, we have a problem with one of our selfwritten tools. We have a tool, that compares sequence with a database. The List of the available databases is loaded from a .txt file. One of our other tools, manages that a new database is added to the .txt file. But Galaxy doesn't recognize the change. It would be nice if someone could give us an advice. Best regards Paul K. Deuster @ Technische Hochschule Mittelhessen __**_ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Refreshing/Reloading Files
Paul, as far as I know the config files (probably loc files) are only refreshed on galaxy_instance restart unfortunatly. So when this is possible to do on the fly I am interested as well. Alex Van: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] namens Admins de Galaxy [galaxy.at.thm@googlemail.com] Verzonden: woensdag 29 juni 2011 10:20 Aan: galaxy-...@bx.psu.edu Onderwerp: [galaxy-dev] Refreshing/Reloading Files Hello everyone, we have a problem with one of our selfwritten tools. We have a tool, that compares sequence with a database. The List of the available databases is loaded from a .txt file. One of our other tools, manages that a new database is added to the .txt file. But Galaxy doesn't recognize the change. It would be nice if someone could give us an advice. Best regards Paul K. Deuster @ Technische Hochschule Mittelhessen ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Refreshing/Reloading Files
Hi Paul You probably need to be a bit more specific...at what stage is this '.txt file' read (or rather should be read)? - are you offering the (growing) list of databases as options to select in the GUI? Hans On 06/29/2011 10:20 AM, Admins de Galaxy wrote: Hello everyone, we have a problem with one of our selfwritten tools. We have a tool, that compares sequence with a database. The List of the available databases is loaded from a .txt file. One of our other tools, manages that a new database is added to the .txt file. But Galaxy doesn't recognize the change. It would be nice if someone could give us an advice. Best regards Paul K. Deuster @ Technische Hochschule Mittelhessen ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
