[Jmol-users] Mavericks Local Server
This is primarily addressed to newer jmol Mac users. For a long time Apple provided a web Sharing option in the Sharing control panel. That disappeared a couple of OSX iterations ago. This allowed you to use the Sites directory in your home account as a local network server. This is handy since it allows you to drag and drop your web pages into the Sites directory during development and serve them from there. If your public server is like ours, uploads can take a long time; this is instantaneous Furthermore, you can test your site with a variety of devices you may have on your local network: my wife’s Windows machine, my iMac (on which the server is located) and MacBook Pro, and my iOS devices, for example. It also by-passes the problem of trying to launch the Java applets from your desktop. That is, it works just like your external public server. It also provides a way to serve your site locally when giving a talk. Most of you longtime Mac users already know all this. But, after having done it a number of years ago when Apple told you how to do it, I went through the process of setting it up under Mavericks where the web serving option is no longer presented. The following document is the best I found for a step-by-step how to: https://discussions.apple.com/docs/DOC-3083 I would add only a couple additional points. If, when you get it all set up, you have permissions errors trying to access the site, check the permissions settings on your home directory and the Sites directory. Everyone must have read access for this to work. The local host name of your new website is: YourMachineName.local. (I have a very complex machine name which is a pain to type in every time I want to access the site.) In the sharing panel, you can change that in the edit option without changing your machine name. a.local works just fine. If you do not want to go to Terminal to turn off and on the apache server, the following link gives you a preference pane for doing so. http://clickontyler.com/web-sharing/ Phil Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol14 scripts
This msCIF stuff is excellent. However, the scaling and vibration dont seem to be working in the jsmol version? Cheers Simon Quoting Robert Hanson hans...@stolaf.edu: some major improvements on the code. See http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.1_2013.12.11b.zip and http://chemapps.stolaf.edu/jmol/jsmol/images.htm On Tue, Dec 10, 2013 at 8:06 AM, s...@publcif.co.uk wrote: Thanks Bob - all is well Quoting Robert Hanson hans...@stolaf.edu: select symop=1555 is fixed. http://chemapps.stolaf.edu/jmol/zip/jmol-14.0.1_2013.12.09.zip (uploading now) On Mon, Dec 9, 2013 at 12:28 PM, Robert Hanson hans...@stolaf.edu wrote: should be a fixable bug. On Mon, Dec 9, 2013 at 4:56 AM, s...@publcif.co.uk wrote: Hi - some of my scripts no longer work with Jmol14 In the first instance I've narrowed this down to select symop=1555 This selects nothing even though I'm working with CIFs that have the symmetry information. symop=1 works OK but symops with the 'ijk' translation part fail. Has something been lost in this distribution? Cheers Simon -- Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Mousewheel zoom reversed in Chrome JSmol versus Jmol 14.0.1
Hi all,
I just noticed that the mousewheel zoom is reversed in JSmol versus Jmol
(Version 14.0.1 and 14.1.1) in Chromium 30 on Linux and Chrome 32 on WinXP:
wheel-up wheel-down
--
Jmol shrink enlarge
JSmol enlargeshrink
In Firefox it is the same for JSmol and Jmol as for Jmol in Chrome.
Regards,
Rolf
--
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Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K. Lenhard Rudolph
Head of Administration: Dr. Daniele Barthel
Chairman of Board of Trustees: Dennys Klein
VAT No: DE 153 925 464
Register of Associations: No. 230296, Amtsgericht Jena
Tax Number: 162/141/08228
--
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[Jmol-users] Platform-specific switch Java/HTML5
Hi all, I thought that there would be still an automatic switch from Java to HTML5 on platforms that don't offer Java at all like 'iPad' (Info setting = 'use: JAVA HTML5'). Q: Is this no longer true for Jmol 14.0.1? After the upgrade of the 'Jena3D Viewer' (http://jena3d.fli-leibniz.de) yesterday to Jmol 14.0.1 I asked someone with an 'iPad mini, 1st generation' to test it and he got the following message (excerpt): Either you do not have Java applets enabled in your web browser or your browser is blocking this applet. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] JSmol HTML5 code : remaining /div
should be a first half of that as well. That's the footer.
On Wed, Dec 11, 2013 at 11:59 PM, Paul Pillot
paul.pil...@ac-orleans-tours.fr wrote:
Hi,
trying to debug one of my webpages that doesn’t display the HTML5 Jmol
(without throwing any error) but that does display the Java version, I’ve
looked at the generated code (jmolApplet0._code) and saw this for the
canvas2D version :
/divdiv id=jmolApplet0_2dappletdiv
style=position:absolute;width:100%;height:100%;overflow:hidden;display:none/divdiv
id=jmolApplet0_infotablediv
style=width:100%;height:100%;position:absolute;top:0px;left:0pxdiv
id=jmolApplet0_infoheaderdiv
style=height:20px;width:100%;background:yellow;display:nonespan
id=jmolApplet0_infoheaderspan/spanspan
id=jmolApplet0_infocheckboxspan
style=position:absolute;text-align:right;right:1px;a
href=javascript:Jmol.showInfo(jmolApplet0,false)[x]/a/span/divdiv
id=jmolApplet0_infodiv
style=position:absolute;top:20px;bottom:0px;width:100%;height:100%;overflow:auto/div/div/divbr
/input type=text id=jmolApplet0_query
onkeypress=if(13==event.which){Jmol._applets['jmolApplet0']._search();return
false} size=32 value= /br /nobrselect
id=jmolApplet0_selectoption value=$ selectedNCI(small
molecules)/optionoption value=: PubChem(small
molecules)/optionoption value==
RCSB(macromolecules)/option/selectbutton id=jmolApplet0_submit
onclick=Jmol._applets['jmolApplet0']._search()Search/button/nobr »
I think that the first closing div might break my design, preventing the
display.
The java version HTML code generated doesn’t begin by a closing tag.
-Paul
--
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Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
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affects their revenue. With AppDynamics, you get 100% visibility into your
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Re: [Jmol-users] JSmol HTML5 code : remaining /div
In JSmolCore.js it reads:
if (isHeader) {
...
s = \
...div id=\ID_appletinfotablediv\
style=\width:Wpx;height:Hpx;position:relative;font-size:14px;text-align:left\IMG\
..div id=\ID_appletdiv\ style=\z-index: + Jmol._z.header +
;width:100%;height:100%;position:absolute;top:0px;left:0px;\;
...
} else {
s = \
../div\
..div id=\ID_2dappletdiv\
style=\position:absolute;width:100%;height:100%;overflow:hidden;display:none\/div\
..div id=\ID_infotablediv\
style=\width:100%;height:100%;position:absolute;top:0px;left:0px\\
.div id=\ID_infoheaderdiv\
style=\height:20px;width:100%;background:yellow;display:none\span
id=\ID_infoheaderspan\/spanspan id=\ID_infocheckboxspan\
style=\position:absolute;text-align:right;right:1px;\a
href=\javascript:Jmol.showInfo(ID,false)\[x]/a/span/div\
.div id=\ID_infodiv\
style=\position:absolute;top:20px;bottom:0px;width:100%;height:100%;overflow:auto\/div\
../div\
.../div;
Pretty sure those are all balanced.
Bob
On Thu, Dec 12, 2013 at 10:04 AM, Robert Hanson hans...@stolaf.edu wrote:
should be a first half of that as well. That's the footer.
On Wed, Dec 11, 2013 at 11:59 PM, Paul Pillot
paul.pil...@ac-orleans-tours.fr wrote:
Hi,
trying to debug one of my webpages that doesn’t display the HTML5 Jmol
(without throwing any error) but that does display the Java version, I’ve
looked at the generated code (jmolApplet0._code) and saw this for the
canvas2D version :
/divdiv id=jmolApplet0_2dappletdiv
style=position:absolute;width:100%;height:100%;overflow:hidden;display:none/divdiv
id=jmolApplet0_infotablediv
style=width:100%;height:100%;position:absolute;top:0px;left:0pxdiv
id=jmolApplet0_infoheaderdiv
style=height:20px;width:100%;background:yellow;display:nonespan
id=jmolApplet0_infoheaderspan/spanspan
id=jmolApplet0_infocheckboxspan
style=position:absolute;text-align:right;right:1px;a
href=javascript:Jmol.showInfo(jmolApplet0,false)[x]/a/span/divdiv
id=jmolApplet0_infodiv
style=position:absolute;top:20px;bottom:0px;width:100%;height:100%;overflow:auto/div/div/divbr
/input type=text id=jmolApplet0_query
onkeypress=if(13==event.which){Jmol._applets['jmolApplet0']._search();return
false} size=32 value= /br /nobrselect
id=jmolApplet0_selectoption value=$ selectedNCI(small
molecules)/optionoption value=: PubChem(small
molecules)/optionoption value==
RCSB(macromolecules)/option/selectbutton id=jmolApplet0_submit
onclick=Jmol._applets['jmolApplet0']._search()Search/button/nobr »
I think that the first closing div might break my design, preventing the
display.
The java version HTML code generated doesn’t begin by a closing tag.
-Paul
--
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___
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Re: [Jmol-users] Mousewheel zoom reversed in Chrome JSmol versus Jmol 14.0.1
incredible! On Thu, Dec 12, 2013 at 9:23 AM, Rolf Huehne rhue...@fli-leibniz.de wrote: Hi all, I just noticed that the mousewheel zoom is reversed in JSmol versus Jmol (Version 14.0.1 and 14.1.1) in Chromium 30 on Linux and Chrome 32 on WinXP: wheel-up wheel-down -- Jmol shrink enlarge JSmol enlargeshrink In Firefox it is the same for JSmol and Jmol as for Jmol in Chrome. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Platform-specific switch Java/HTML5
It's still there. Should work. RCSB uses this. Proteopedia, I think. I can check that. It all depends upon the result of Jmol.featureDetection.supportsJava() which depends upon navigator.javaEnabled() Apparently that device reports TRUE for this message. You have just spaces between JAVA and HTML5 -- no tabs or commas or semicolons? On Thu, Dec 12, 2013 at 9:36 AM, Rolf Huehne rhue...@fli-leibniz.de wrote: Hi all, I thought that there would be still an automatic switch from Java to HTML5 on platforms that don't offer Java at all like 'iPad' (Info setting = 'use: JAVA HTML5'). Q: Is this no longer true for Jmol 14.0.1? After the upgrade of the 'Jena3D Viewer' (http://jena3d.fli-leibniz.de) yesterday to Jmol 14.0.1 I asked someone with an 'iPad mini, 1st generation' to test it and he got the following message (excerpt): Either you do not have Java applets enabled in your web browser or your browser is blocking this applet. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol14 scripts
I guess that's my job today, then On Thu, Dec 12, 2013 at 9:11 AM, s...@publcif.co.uk wrote: This msCIF stuff is excellent. However, the scaling and vibration dont seem to be working in the jsmol version? Cheers Simon Quoting Robert Hanson hans...@stolaf.edu: some major improvements on the code. See http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.1_2013.12.11b.zip and http://chemapps.stolaf.edu/jmol/jsmol/images.htm On Tue, Dec 10, 2013 at 8:06 AM, s...@publcif.co.uk wrote: Thanks Bob - all is well Quoting Robert Hanson hans...@stolaf.edu: select symop=1555 is fixed. http://chemapps.stolaf.edu/jmol/zip/jmol-14.0.1_2013.12.09.zip(uploading now) On Mon, Dec 9, 2013 at 12:28 PM, Robert Hanson hans...@stolaf.edu wrote: should be a fixable bug. On Mon, Dec 9, 2013 at 4:56 AM, s...@publcif.co.uk wrote: Hi - some of my scripts no longer work with Jmol14 In the first instance I've narrowed this down to select symop=1555 This selects nothing even though I'm working with CIFs that have the symmetry information. symop=1 works OK but symops with the 'ijk' translation part fail. Has something been lost in this distribution? Cheers Simon -- Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Platform-specific switch Java/HTML5
On Dec 12, 2013, at 6:19 PM, Robert Hanson hans...@stolaf.edu wrote: It's still there. Should work. RCSB uses this. Proteopedia, I think. On Proteopedia we use MobileDetect.php ( http://mobiledetect.net ) to send back to the user a proper configuration based on the platform. It seems that checking for Java can't go undetected and it generates the java disabled yellow applet report. Jaim -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Platform-specific switch Java/HTML5
On 12/12/2013 05:19 PM, Robert Hanson wrote: It's still there. Should work. RCSB uses this. Proteopedia, I think. I can check that. It all depends upon the result of Jmol.featureDetection.supportsJava() which depends upon navigator.javaEnabled() Apparently that device reports TRUE for this message. You have just spaces between JAVA and HTML5 -- no tabs or commas or semicolons? Just a space. But when I knew it should still work I looked deeper into this and found that the default JAVA HTML5 setting was overwritten later by JAVA in the tested case. This leads to related questions. In the 'Jena3D Viewer' you can request specifically Jmol or JSmol. And this decision is also inherited by subsequent viewer openings from the current viewer or from a QuickSearch result from within the viewer. Q: How should this be handled regarding the fallback setting? (It would be quite tricky to discriminate between the different cases.) Q: Is there a situation where HTML5 JAVA would lead to using Java instead of HTML5 automatically? Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Platform-specific switch Java/HTML5
Just for info, I've found JAVA detection can not be relied upon as even if the browser reports that JAVA is present, it may not actually be enabled (browser blocks it). I used to work around this by trying to run a simple jmolscript on a timeout after I'd initialized the jmol applet and 'catching' the error. This was fairly reliable, though depending on timing I could needlessly switch to HTML5 even though JAVA was present... Currently I use mobile detection client-side (detectmobilebrowser.js) to choose a default (HTML5 or JAVA), and if all goes wrong, I've modified the 'yellow box' with a link to a function that re-initializes Jmol with HTML5... None of this is perfect so I'd be interested to hear any other ideas on how to handle this sort of thing... Cheers Simon Quoting Jaime Prilusky jaime.prilu...@weizmann.ac.il: On Dec 12, 2013, at 6:19 PM, Robert Hanson hans...@stolaf.edu wrote: It's still there. Should work. RCSB uses this. Proteopedia, I think. On Proteopedia we use MobileDetect.php ( http://mobiledetect.net ) to send back to the user a proper configuration based on the platform. It seems that checking for Java can't go undetected and it generates the java disabled yellow applet report. Jaim -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Jmol14 scripts
OK, this should all be fixed. http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.1_2013.12.12.zip Latest fun: http://chemapps.stolaf.edu/jmol/jsmol/images.htm On Thu, Dec 12, 2013 at 10:28 AM, Robert Hanson hans...@stolaf.edu wrote: specifally cartoons...hmm... On Thu, Dec 12, 2013 at 9:47 AM, Otis Rothenberger osrot...@chemagic.comwrote: Bob and Phil, I'm seeing the same thing with pdb files on the ISU server. Load 1smd results in colors all over the screen. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 12, 2013, at 6:27 AM, Philip Bays pb...@saintmarys.edu wrote: Bob: In this release, testing jsmol here and at your site, 1blu and 1d66 are goofy. The colors are all over the screen. On Dec 12, 2013, at 12:35 AM, Robert Hanson hans...@stolaf.edu wrote: -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
