Re: [Jmol-users] Jmol 14.x.4 released

2014-01-07 Thread N David Brown
Is the newest Maven artifact still 13.1.15-SNAPSHOT? That’s the most recent
I see 
herehttps://oss.sonatype.org/content/repositories/snapshots/net/sourceforge/jmol/jmol/.

Would be great to have a newer Maven release; I'd like to make use of the
cel shading I added.
Cheers,

Dave

On 6 January 2014 05:39, Jaime Prilusky jaime.prilu...@weizmann.ac.ilwrote:


 https://sourceforge.net/projects/jmol/files/Jmol/Version%2014.0/Version%2014.0.4
  Not much here, but one important fix for ribbons, so if you do anything
 with proteins be sure to download this modification in 14.0 and 14.1.
  Bob


 Thank you.

  Fixed the misplaced rockets elements.

  PSE conversion works smooth, no problems reported at
 http://ispcsrv.weizmann.ac.il/a2jmolb/browse

  Best Regards,

  Jaim


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[Jmol-users] JSmol menu doesn't open

2014-01-07 Thread Eric Martz
I cannot seem to get the JSmol menu to open in 14.0.3 e.g.

http://firstglance.jmol.org/fg.htm?mol=1d66use=html5

Any suggestions?

Eric




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[Jmol-users] Open GL initialized by Jmol?

2014-01-07 Thread Eric Martz
When I load the Jmol_S applet 14.0.4 in Firefox on OS 10.6.8,

http://firstglance.jmol.org/fg.htm?mol=1d66

the Browser Console (Tools menu, Web Developer) reports:

OpenGL LayerManager Initialized Succesfully.
Version: 2.1 NVIDIA-1.6.36
Vendor: NVIDIA Corporation
Renderer: NVIDIA GeForce 8600M GT OpenGL Engine
FBO Texture Target: TEXTURE_2D

But I am not, as far as I know, using Open GL. ???

This message does not occur when loading JSmol.

Perhaps this is not a problem but I just wondered.

Eric


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[Jmol-users] Bug: translucent backbone/wireframe broken

2014-01-07 Thread Eric Martz
Dear Bob,

In Jmol 14.0.4, attempting to make backbone or wireframe translucent 
makes it invisible. This was not true in Jmol 13.

load =1al1
backbone only
backbone 0.5
color backbone translucent 1

All levels of translucency are invisible, including -1. For atoms 
(spacefill) and cartoon, translucency works as in previous versions. 
However for wireframe, translucency makes it it invisible.

Eric


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Re: [Jmol-users] JSmol menu doesn't open

2014-01-07 Thread Jaime Prilusky
Are you in any way disabling or capturing events from mouse right-click ?

Jaim

On Jan 7, 2014, at 5:56 PM, Eric Martz ema...@microbio.umass.edu wrote:

 I cannot seem to get the JSmol menu to open in 14.0.3 e.g.
 
 http://firstglance.jmol.org/fg.htm?mol=1d66use=html5
 
 Any suggestions?
 
 Eric
 
 
 
 
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Re: [Jmol-users] JSmol menu doesn't open (+ request for benchmark times)

2014-01-07 Thread Rzepa, Henry S

On 7 Jan 2014, at 16:58, Jaime Prilusky jaime.prilu...@weizmann.ac.il wrote:

 Are you in any way disabling or capturing events from mouse right-click ?
 
 Jaim


14.0.3 JSmol,  I cannot get  the script command menu to produce a menu, eg 
http://www.ch.ic.ac.uk/local/organic/conf/

Might this be related?

PS I have done some simple graphical benchmarks  ( 
https://wiki.ch.ic.ac.uk/wiki/index.php?title=Tablet:tablet#Tested_Devices ), 
testing the rotation of a simple rendered animated, anti-aliased model. 

The Java speed is  ~37 seconds (deriving from spin 10;  which would nominally 
take  36 seconds), whilst various tablet devices can take up to 350 seconds 
(2nd gen iPad Mini).  If there are any owners of tablets not on the current 
(small) list that can report back a benchmark,  I would be very grateful. 



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