Re: [Mauve-users] XMFA TO MAF

[ait zai Lynda]

Hi Aaron, Thank you for your answer.

$bunzip2 xmfa2maf and $chmod 755 xmfa2maf works well.
But when i try to execute i get this results  :

$./xmfa2maf threeway.xmfa threeway.maf

Exception FileNotOpened thrown from
Unknown()  in gnFileSource.cpp 67
Called by Unknown()
Segmentation fault (core dumped)

Would you know how to do to execute the xmaf2maf proprly?


Thank you fore your help :)

2017-01-31 21:21 GMT+01:00 Aaron Darling :

> Hi Lynda, can you please reply on list instead of privately?
>
> On Tue, 2017-01-31 at 17:12 +0100, ait zai Lynda wrote:
>
> Hi Aaron, Thank you for your answer.
>
> $bunzip2 xmfa2maf and $chmod 755 xmfa2maf works well.
> But when i try to execute i get this results  :
>
> $./xmfa2maf threeway.xmfa threeway.maf
>
> Exception FileNotOpened thrown from
> Unknown()  in gnFileSource.cpp 67
> Called by Unknown()
> Segmentation fault (core dumped)
>
> Would you know how to do to execute the xmaf2maf proprly?
>
>
> Thank you fore your help :)
>
>
>
>
>
>
> 2017-01-30 2:35 GMT+01:00 Aaron Darling :
>
> Hi Lynda, have you tried using the xmfa2maf program that is part of the
> Mauve codebase? A build for linux is available here:
> http://darlinglab.org/mauve/snapshots/2015/2015-02-13/linux-
> x64/xmfa2maf.bz2
>
> to run one must first do:
> bunzip2 xmfa2maf
> chmod 755 xmfa2maf
>
> If you've already tried that without luck can you describe the problems
> you encountered?
>
> Cheers,
> -Aaron
>
> On Sun, 2017-01-29 at 16:37 +0100, ait zai Lynda wrote:
>
> hi everyone,
>
> i'm new in the alignment, i want to convert my XMFA file to MAF file.
> Does anyone know how i can do it?
>
>
> thank you in advance
>
> --
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> Aaron E. Darling, Ph.D.
> Associate Professor, ithree institute
> University of Technology Sydney
> Australia
> http://darlinglab.org
> twitter: @koadman
>
>
>
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Re: [Mauve-users] XMFA TO MAF

[Aaron Darling]

Hi Lynda, have you tried using the xmfa2maf program that is part of the
Mauve codebase? A build for linux is available here:
http://darlinglab.org/mauve/snapshots/2015/2015-02-13/linux-x64/xmfa2ma
f.bz2
to run one must first do:
bunzip2 xmfa2maf
chmod 755 xmfa2maf
If you've already tried that without luck can you describe the problems
you encountered?
Cheers,
-Aaron
On Sun, 2017-01-29 at 16:37 +0100, ait zai Lynda wrote:
> hi everyone, 
> 
> i'm new in the alignment, i want to convert my XMFA file to MAF
> file. 
> Does anyone know how i can do it?
> 
> 
> thank you in advance
> ---
> ---
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, SlashDot.org! http://sdm.link/slashdot
> ___
> Mauve-users mailing list
> Mauve-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mauve-users
-- 
Aaron E. Darling, Ph.D.
Associate Professor, ithree institute
University of Technology Sydney
Australia

http://darlinglab.org
twitter: @koadman





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confidential information.
If you are not the intended recipient, do not read, use, disseminate, 
distribute or copy this message or
attachments. If you have received this message in error, please notify the 
sender immediately and delete
this message. Any views expressed in this message are those of the individual 
sender, except where the
sender expressly, and with authority, states them to be the views of the 
University of Technology Sydney.
Before opening any attachments, please check them for viruses and defects.

Think. Green. Do.

Please consider the environment before printing this email.
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