from:"Reuter, Michael A."

Re: [Paraview] Superbuild and Windows

2014-09-11 Thread Reuter, Michael A.

I used a system Python which is pointed at a Python we distribute with Mantid 
on Windows. BTW, do you want me to pass along the patches I have for the 
USE_SYSTEM_matplotlib issues I run into, or should I just handle those in a 
Superbuild fork?

Thanks,
M


On Sep 11, 2014, at 1:21 AM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael, with VS2012, what was your selection for Python? Were you
using system Python or did you let the superbuild build its own?

Utkarsh

On Fri, Sep 5, 2014 at 4:58 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
I’m working with VS2012. Thanks for the update on Mavericks.

M
On Sep 5, 2014, at 4:32 PM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Great! Which VS was this? The Pygments thing should be tracked down.
I'll see what's happening there. BTW, I am making progress on
Mavericks build. I think I have most things ironed out. I'll send an
updated email once I have dashboard testing it.

Utkarsh

On Fri, Sep 5, 2014 at 4:29 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
I switched to Ninja and shortened up the paths, but what really got things 
working was passing the VTK_USE_SYSTEM_PYGMENTS down to the ParaView CMake 
config via the PV_EXTRA_CMAKE_ARGS. After that, the build went smoothly. I hit 
a snag on creating the package because I’m triggering the USE_SYSTEM_matplotlib 
option and the Projects/win32/paraview.bundle.cmake does not trap the copying 
of matplotlib related items when this flag is used. I see a similar issue in 
the Projects/apple/paraview.bundle.cmake file as well. I added a AND NOT 
USE_SYSTEM_matplotlib to the if (matplotlib_ENABLED) line and that fixed the 
generated cmake_install.cmake file and the package created fine. I’ve tested 
the resulting package and so far so good.

M


On Sep 3, 2014, at 10:24 AM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com
 wrote:

Michael,

Are you using VS generator? Can you switch to using Ninja? You can
still use the MSVC compilers. The error is popping up when the build
is trying to compiler the pygments *.py files. You'll get the same
error later when it's trying to compile the ParaView *.py files.

Also, another thing to note is that Windows has issues with long
paths. So I'd suggest moving the superbuild source and build
directories to something lower to avoid those e.g. C:/tmp/pvs-src and
C:/tmp/pvs-build.

Finally, if you're using VS2012, you'll need to use a system Python.
Currently. the Python included in the superbuild is intended for
VS2008. Also VS2012, is currently untested. As a first pass, if
possible, I'd suggest using VS 2008. Once that's working, you can give
VS2012 try. Hopefully, it should work (except the Python caveat), but
I am always wary of VS version differences.

Utkarsh



On Wed, Sep 3, 2014 at 10:07 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,



 I’m having an issue with the ParaView Superbuild on Windows
(VS2012). I get this error during the build process:



  322  Compiling Python package 'pygments'



  322  Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments
...



  322  Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\filters
...



  322  Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\formatters
...



  322  Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\lexers
...



  322  Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\styles
...



  322  ImportError: No module named site



  9C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
error MSB6006: cmd.exe exited with code 1.
[C:\Users\2zr\Build\ParaView-Superbuild\paraview.vcxproj]



  322

  322Build FAILED.



However, the site module exists when I run python. I’m building from a
script so I can control the environment. Everything else seems to build just
fine. However, nothing appears in the install directory for cpack to find. I
can’t tell if this build error is disrupting the process or something else
is going wrong. What controls the pygments build so I can shut it off for
now?



Thanks,

M



Dr. Michael Reuter

Scientific Data Analysis Group

Neutron Data Analysis and Visualization Division

Oak Ridge National Laboratory



Office: 1-865-241-7216

Fax: 1-865-574-6080

Email: reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov






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Re: [Paraview] Superbuild and Windows

2014-09-11 Thread Reuter, Michael A.

The patches are attached. They aren’t much but they help get the package (on 
Windows and OSX) built without issues. The package I made against the system 
Python seems to work OK although I have not exhaustively tested it. The python 
interpreter interaction inside ParaView seems to work fine with the few tests 
and examples I ran on it.

M




apple_system_matplotlib.patch
Description: apple_system_matplotlib.patch


win32_system_matplotlib.patch
Description: win32_system_matplotlib.patch



On Sep 11, 2014, at 10:56 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:Michael,The patches would be great! I don't think we tested with system Python on Windows.UtkarshOn Thu, Sep 11, 2014 at 8:34 AM, Reuter, Michael A. reute...@ornl.gov wrote:I used a system Python which is pointed at a Python we distribute with Mantid on Windows. BTW, do you want me to pass along the patches I have for the USE_SYSTEM_matplotlib issues I run into, or should I just handle those in a Superbuild fork?

Thanks,
M


On Sep 11, 2014, at 1:21 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael, with VS2012, what was your selection for Python? Were you
using system Python or did you let the superbuild build its own?

Utkarsh

On Fri, Sep 5, 2014 at 4:58 PM, Reuter, Michael A. reute...@ornl.govmailto:reute...@ornl.gov wrote:
I’m working with VS2012. Thanks for the update on Mavericks.

M
On Sep 5, 2014, at 4:32 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Great! Which VS was this? The Pygments thing should be tracked down.
I'll see what's happening there. BTW, I am making progress on
Mavericks build. I think I have most things ironed out. I'll send an
updated email once I have dashboard testing it.

Utkarsh

On Fri, Sep 5, 2014 at 4:29 PM, Reuter, Michael A. reute...@ornl.govmailto:reute...@ornl.gov wrote:
I switched to Ninja and shortened up the paths, but what really got things working was passing the VTK_USE_SYSTEM_PYGMENTS down to the ParaView CMake config via the PV_EXTRA_CMAKE_ARGS. After that, the build went smoothly. I hit a snag on creating the package because I’m triggering the USE_SYSTEM_matplotlib option and the Projects/win32/paraview.bundle.cmake does not trap the copying of matplotlib related items when this flag is used. I see a similar issue in the Projects/apple/paraview.bundle.cmake file as well. I added a AND NOT USE_SYSTEM_matplotlib to the if (matplotlib_ENABLED) line and that fixed the generated cmake_install.cmake file and the package created fine. I’ve tested the resulting package and so far so good.

M


On Sep 3, 2014, at 10:24 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael,

Are you using VS generator? Can you switch to using Ninja? You can
still use the MSVC compilers. The error is popping up when the build
is trying to compiler the pygments *.py files. You'll get the same
error later when it's trying to compile the ParaView *.py files.

Also, another thing to note is that Windows has issues with long
paths. So I'd suggest moving the superbuild source and build
directories to something lower to avoid those e.g. C:/tmp/pvs-src and
C:/tmp/pvs-build.

Finally, if you're using VS2012, you'll need to use a system Python.
Currently. the Python included in the superbuild is intended for
VS2008. Also VS2012, is currently untested. As a first pass, if
possible, I'd suggest using VS 2008. Once that's working, you can give
VS2012 try. Hopefully, it should work (except the Python caveat), but
I am always wary of VS version differences.

Utkarsh



On Wed, Sep 3, 2014 at 10:07 AM, Reuter, Michael A. reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,



  I’m having an issue with the ParaView Superbuild on Windows
(VS2012). I get this error during the build process:



   322 Compiling Python package 'pygments'



   322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments
...



   322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\filters
...



   322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\formatters
...



   322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\lexers
...



   322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\styles
...



   322 ImportError: No module named site



 9C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
error MSB6006: "cmd.exe" exited with code 1.
[C:\Users\2zr\Build\ParaView-Superbuild\paraview.vcxproj]



   322

   322Build FAILED.

Re: [Paraview] Superbuild and OSX

2014-09-08 Thread Reuter, Michael A.

After updating the Superbuild code and cleaning house, I was still seeing the 
ParaView CMake configure failure I reported before. I did a bit of digging and 
found that the generated pv-paraview-build.cmake was trying to execute the 
following command: step_command-NOTFOUND. It seems to be related to trying to 
use ninja instead of make files. I switched to make files and the build is in 
progress.

Thanks,
M



On Sep 7, 2014, at 1:58 PM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Alright, Superbuild + Mavericks is now working as expected. It's now
tested on the dashboards too:

http://open.cdash.org/buildSummary.php?buildid=3479885

If looking for options to turn on, here's a good start:
http://open.cdash.org/viewNotes.php?buildid=3479885

Utkarsh

On Thu, Sep 4, 2014 at 9:22 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.com wrote:
Sorry, I did  mean Mavericks :)..I can never keep the MacOS names straight.

On Thu, Sep 4, 2014 at 8:00 AM, Reuter, Michael A. reute...@ornl.gov wrote:
Thanks for the update. I’m actually building on Mavericks, but our project is 
still supporting Mountain Lion so it will be good to have it work there.

M


On Sep 3, 2014, at 11:57 PM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael,

Hold off on using the superbuild on MountainLion for now. I'll track
the issues down and then let you know.


Utkarsh

On Wed, Sep 3, 2014 at 6:23 PM, Utkarsh Ayachit
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:
Michael,

Let me try this on a Moutain Lion myself and I'll let you know. What
projects  are you turning on in your build?

Utkarsh

On Wed, Sep 3, 2014 at 2:40 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
This gets around the clang argument problem, but the ParaView CMake 
configuration step still fails for an unknown reason.

M

On Sep 3, 2014, at 10:28 AM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com
 wrote:

Cherry-pick this fix for now : http://review.source.kitware.com/#/c/16665/
It'll go into master soon.

Ben, anything this fix is waiting on?

Utkarsh

On Wed, Sep 3, 2014 at 9:42 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

 I’m having trouble getting the git-master version of the Superbuild 
running on OSX (10.9) with clang (5.1). Setting the CMAKE_OSX_SYSROOT variable 
causes the following error during CMake (2.8.12.2) generation for the ParaView 
subproject:

-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler using: Ninja
-- Check for working C compiler using: Ninja -- broken
CMake Error at /Applications/CMake 
2.8-12.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:61 
(message):
The C compiler /usr/bin/cc is not able to compile a simple test program.

It fails with the following output:

Change Dir: 
/Users/2zr/build/ParaView-Superbuild/paraview/src/paraview-build/CMakeFiles/CMakeTmp

Run Build Command:/usr/local/bin/ninja cmTryCompileExec4050157075

[1/2] Building C object
CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o

FAILED: /usr/bin/cc -fPIC -arch x86_64 -mmacosx-version-min=10.9
-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
-o CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o -c
testCCompiler.c

clang: error: unknown argument:
'-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk'
[-Wunused-command-line-argument-hard-error-in-future]

clang: note: this will be a hard error (cannot be downgraded to a warning)
in the future

ninja: build stopped: subcommand failed.

Even if I empty the CMAKE_OSX_SYSROOT variable, the system still tries to pass 
an empty -sysroot flag to clang causing it to choke. I removed the sysroot flag 
from the top-level CMakeLists.txt, but then the ParaView CMake setup fails for 
a reason I can’t seem to understand. I’m attaching the log showing the CMake 
output. The only obvious thing I see is the Fortran compiler. Is that required?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov


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[Paraview] Replacement for colorByArray

2014-09-05 Thread Reuter, Michael A.

Hi,

I have an application that I’m trying to conform back to git-master in 
preparation for the version 4.2 release. In the application, I used the 
pqPipelineRepresentation::colorByArray function to preset the colormap array 
before the data is rendered. I see that this function has been removed. I did a 
bit of digging and tried to use the following as a replacement (signal is our 
default array name):

pqDataRepresentation *drep = objectBuilder-createDataRepresentation(…);
vtkSMPropertyHelper(drep-getProxy(), “Representation”).Set(“Surface”);
vtkSMPropertyHelper(drep-getProxy(), “ColorArrayName”).Set(“signal”);
drep-getProxy()-UpdateVTKObjects();

However, this doesn’t seem to set the correct array as the view shows Solid 
Color for the array when it renders. I’m either invoking things incorrectly or 
at the wrong time, but I don’t know what. What am I missing or is there a more 
appropriate alternative to this method?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov






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Re: [Paraview] Replacement for colorByArray

2014-09-05 Thread Reuter, Michael A.

Hi Yumin,

Thanks for the pointer as now the array is set. My next problem is that the 
transfer function range is (0, 1) and not the range of my array. I tried using 
vtkSMPVRepresentationProxy::RescaleTransferFunctionToDataRange, but ParaView 
gives a Could not determine array range warning. I wedged a UpdateVTKObjects() 
between the two calls but that didn’t help. What’s the right way to do this?

As a larger issue, I’m seeing that my old (PV 3.98.1 based) application is not 
liking how PV 4.2 is handling things. Is there any documentation or good 
examples of how things should be done for 4.2? My focus is on how to 
programmatically do things like: source and filter creation, pipeline 
construction and manipulation, manage different views, color map/transfer 
function manipulation, camera resetting. Now is the perfect time for a bit of a 
rewrite, but I’d definitely like to align things to how 4.2 wants things done.

Thanks,
M

On Sep 5, 2014, at 9:40 AM, Yumin Yuan 
yumin.y...@kitware.commailto:yumin.y...@kitware.com wrote:

Hi Michael,

Checkout out vtkSMPVRepresentationProxy::SetScalarColoring(...).
I think that's what you are looking for.

Yumin


On Fri, Sep 5, 2014 at 9:24 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

I have an application that I’m trying to conform back to git-master in 
preparation for the version 4.2 release. In the application, I used the 
pqPipelineRepresentation::colorByArray function to preset the colormap array 
before the data is rendered. I see that this function has been removed. I did a 
bit of digging and tried to use the following as a replacement (signal is our 
default array name):

pqDataRepresentation *drep = objectBuilder-createDataRepresentation(…);
vtkSMPropertyHelper(drep-getProxy(), “Representation”).Set(“Surface”);
vtkSMPropertyHelper(drep-getProxy(), “ColorArrayName”).Set(“signal”);
drep-getProxy()-UpdateVTKObjects();

However, this doesn’t seem to set the correct array as the view shows Solid 
Color for the array when it renders. I’m either invoking things incorrectly or 
at the wrong time, but I don’t know what. What am I missing or is there a more 
appropriate alternative to this method?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216tel:1-865-241-7216
Fax: 1-865-574-6080tel:1-865-574-6080
Email: 
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov






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Re: [Paraview] Superbuild and Windows

2014-09-05 Thread Reuter, Michael A.

I switched to Ninja and shortened up the paths, but what really got things
working was passing the VTK_USE_SYSTEM_PYGMENTS down to the ParaView CMake
config via the PV_EXTRA_CMAKE_ARGS. After that, the build went smoothly. I hit
a snag on creating the package because I’m triggering the USE_SYSTEM_matplotlib
option and the Projects/win32/paraview.bundle.cmake does not trap the copying
of matplotlib related items when this flag is used. I see a similar issue in
the Projects/apple/paraview.bundle.cmake file as well. I added a AND NOT
USE_SYSTEM_matplotlib to the if (matplotlib_ENABLED) line and that fixed the
generated cmake_install.cmake file and the package created fine. I’ve tested
the resulting package and so far so good.

On Sep 3, 2014, at 10:24 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael,

Are you using VS generator? Can you switch to using Ninja? You can
still use the MSVC compilers. The error is popping up when the build
is trying to compiler the pygments *.py files. You'll get the same
error later when it's trying to compile the ParaView *.py files.

Also, another thing to note is that Windows has issues with long
paths. So I'd suggest moving the superbuild source and build
directories to something lower to avoid those e.g. C:/tmp/pvs-src and
C:/tmp/pvs-build.

Finally, if you're using VS2012, you'll need to use a system Python.
Currently. the Python included in the superbuild is intended for
VS2008. Also VS2012, is currently untested. As a first pass, if
possible, I'd suggest using VS 2008. Once that's working, you can give
VS2012 try. Hopefully, it should work (except the Python caveat), but
I am always wary of VS version differences.

Utkarsh

On Wed, Sep 3, 2014 at 10:07 AM, Reuter, Michael A.
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

I’m having an issue with the ParaView Superbuild on Windows
(VS2012). I get this error during the build process:

322 Compiling Python package 'pygments'

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\filters
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\formatters
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\lexers
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\styles
...

322 ImportError: No module named site

9C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
error MSB6006: cmd.exe exited with code 1.
[C:\Users\2zr\Build\ParaView-Superbuild\paraview.vcxproj]

322

322Build FAILED.

However, the site module exists when I run python. I’m building from a
script so I can control the environment. Everything else seems to build just
fine. However, nothing appears in the install directory for cpack to find. I
can’t tell if this build error is disrupting the process or something else
is going wrong. What controls the pygments build so I can shut it off for
now?

Thanks,

Dr. Michael Reuter

Scientific Data Analysis Group

Neutron Data Analysis and Visualization Division

Oak Ridge National Laboratory

Office: 1-865-241-7216

Fax: 1-865-574-6080

Email: reute...@ornl.govmailto:reute...@ornl.gov

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Re: [Paraview] Superbuild and OSX

2014-09-04 Thread Reuter, Michael A.

Thanks for the update. I’m actually building on Mavericks, but our project is 
still supporting Mountain Lion so it will be good to have it work there.

M


On Sep 3, 2014, at 11:57 PM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Michael,

Hold off on using the superbuild on MountainLion for now. I'll track
the issues down and then let you know.


Utkarsh

On Wed, Sep 3, 2014 at 6:23 PM, Utkarsh Ayachit
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:
Michael,

Let me try this on a Moutain Lion myself and I'll let you know. What
projects  are you turning on in your build?

Utkarsh

On Wed, Sep 3, 2014 at 2:40 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
This gets around the clang argument problem, but the ParaView CMake 
configuration step still fails for an unknown reason.

M

On Sep 3, 2014, at 10:28 AM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com
 wrote:

Cherry-pick this fix for now : http://review.source.kitware.com/#/c/16665/
It'll go into master soon.

Ben, anything this fix is waiting on?

Utkarsh

On Wed, Sep 3, 2014 at 9:42 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

  I’m having trouble getting the git-master version of the Superbuild 
running on OSX (10.9) with clang (5.1). Setting the CMAKE_OSX_SYSROOT variable 
causes the following error during CMake (2.8.12.2) generation for the ParaView 
subproject:

-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler using: Ninja
-- Check for working C compiler using: Ninja -- broken
CMake Error at /Applications/CMake 
2.8-12.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:61 
(message):
The C compiler /usr/bin/cc is not able to compile a simple test program.

It fails with the following output:

 Change Dir: 
/Users/2zr/build/ParaView-Superbuild/paraview/src/paraview-build/CMakeFiles/CMakeTmp

Run Build Command:/usr/local/bin/ninja cmTryCompileExec4050157075

[1/2] Building C object
CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o

FAILED: /usr/bin/cc -fPIC -arch x86_64 -mmacosx-version-min=10.9
-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
-o CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o -c
testCCompiler.c

clang: error: unknown argument:
'-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk'
[-Wunused-command-line-argument-hard-error-in-future]

clang: note: this will be a hard error (cannot be downgraded to a warning)
in the future

ninja: build stopped: subcommand failed.

Even if I empty the CMAKE_OSX_SYSROOT variable, the system still tries to pass 
an empty -sysroot flag to clang causing it to choke. I removed the sysroot flag 
from the top-level CMakeLists.txt, but then the ParaView CMake setup fails for 
a reason I can’t seem to understand. I’m attaching the log showing the CMake 
output. The only obvious thing I see is the Fortran compiler. Is that required?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov


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[Paraview] QuadView option

2014-09-04 Thread Reuter, Michael A.

Hi,

I’m looking for the option that turns off the outline in the 3D panel in the 
Quad View in ParaView git-master. This used to be in the view settings dialog, 
but that no longer exists and the settings dialog doesn’t seem to have it 
unless I missed it. The Slice View has a similar option in the Properties panel 
under Background, but nothing appears there for the Quad View.

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov






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Re: [Paraview] QuadView option

2014-09-04 Thread Reuter, Michael A.

Hi Utkarsh,

The outline only comes into effect when using the Slices representation in the
Quad View. If you use the Surface rep, there is no outline.

On Sep 4, 2014, at 11:38 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Can someone explain what this option is supposed to do? Even in 3.98.1
it has no effect for me, or at least I don't see anything change.

On Thu, Sep 4, 2014 at 11:30 AM, Sebastien Jourdain
sebastien.jourd...@kitware.commailto:sebastien.jourd...@kitware.com wrote:
On my Mac from yesterday's master, the option does allow me to toggle the
outline.
I just forgot about that Slices representation...

On Thu, Sep 4, 2014 at 9:25 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

I think the Show Outline in 3D View on the Properties panel is
indeed the right option. The fact that it has no effect is a bug.

Utkarsh

On Thu, Sep 4, 2014 at 11:20 AM, Reuter, Michael A.
reute...@ornl.govmailto:reute...@ornl.gov
wrote:
I’m providing a screenshot showing the option (Show Outline in 3D View)
that appears in the View Settings dialog box in PV 3.98.1. The dialog was
available from Edit/View Settings menu option. The 3D outline was effective
when the Slice representation is used. This also brings up another issue.
All the options that are in this dialog are not available either. I use the
Quad View in a user distributed program and some of them use these options.
They aren’t going to be happy when the upgrade removes them.

[cid:3662796F-3858-454F-9AF6-C956B97353FA@ornl.govmailto:3662796f-3858-454f-9af6-c956b9735...@ornl.gov]

On Sep 4, 2014, at 10:50 AM, Sebastien Jourdain
sebastien.jourd...@kitware.commailto:sebastien.jourd...@kitware.commailto:sebastien.jourd...@kitware.com
wrote:

Hi Michael,

I don't think there is such option.
In fact, this must be due to the representation be set to Outline in
the toolbar.
If you change it to Surface of Wireframe you should not see anymore the
outline.

Seb

On Thu, Sep 4, 2014 at 8:09 AM, Reuter, Michael A.
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

I’m looking for the option that turns off the outline in the 3D panel in
the Quad View in ParaView git-master. This used to be in the view settings
dialog, but that no longer exists and the settings dialog doesn’t seem to
have it unless I missed it. The Slice View has a similar option in the
Properties panel under Background, but nothing appears there for the Quad
View.

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216tel:1-865-241-7216
Fax: 1-865-574-6080tel:1-865-574-6080
Email:
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov

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Re: [Paraview] QuadView option

2014-09-04 Thread Reuter, Michael A.

From what I gathered from my users, I think what’s in the Miscellaneous group
should have default visibility and the rest can go to advanced. I think that’s
where part of my confusion came from was that things have moved around and
views have advanced panels. Error code 18, replace user and try again. Thanks
for “setting” me straight.

Cheers,
M

On Sep 4, 2014, at 12:09 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

Attached is the patch (will be in git/master after next gatekeeper
review). I made all the properties default to avoid confusion.
Michael, feel free to suggest better default visibility options.

Thanks
Utkarsh

On Thu, Sep 4, 2014 at 12:00 PM, Utkarsh Ayachit
utkarsh.ayac...@kitware.com wrote:
BTW, I am pushing an update to the git repo to better organize the
properties on the Properties panel for the Quad View.

On Thu, Sep 4, 2014 at 11:56 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.com wrote:
Alright, here's the final diagnosis :):

It's works as Seb was saying. What I was missing that I had not
selected the Slices representation. Once Slices representation is
chosen, the Show outline in 3D view option starts working. This is
indeed the way the view behaves in 3.98.1 as well.

Utkarsh

On Thu, Sep 4, 2014 at 11:38 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.com wrote:
Can someone explain what this option is supposed to do? Even in 3.98.1
it has no effect for me, or at least I don't see anything change.

On Thu, Sep 4, 2014 at 11:30 AM, Sebastien Jourdain
sebastien.jourd...@kitware.com wrote:
On my Mac from yesterday's master, the option does allow me to toggle the
outline.
I just forgot about that Slices representation...

On Thu, Sep 4, 2014 at 9:25 AM, Utkarsh Ayachit
utkarsh.ayac...@kitware.com wrote:

I think the Show Outline in 3D View on the Properties panel is
indeed the right option. The fact that it has no effect is a bug.

Utkarsh

On Thu, Sep 4, 2014 at 11:20 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
I’m providing a screenshot showing the option (Show Outline in 3D View)
that appears in the View Settings dialog box in PV 3.98.1. The dialog
was
available from Edit/View Settings menu option. The 3D outline was
effective
when the Slice representation is used. This also brings up another
issue.
All the options that are in this dialog are not available either. I use
the
Quad View in a user distributed program and some of them use these
options.
They aren’t going to be happy when the upgrade removes them.

[cid:3662796F-3858-454F-9AF6-C956B97353FA@ornl.gov]

On Sep 4, 2014, at 10:50 AM, Sebastien Jourdain
sebastien.jourd...@kitware.commailto:sebastien.jourd...@kitware.com
wrote:

Hi Michael,

I don't think there is such option.
In fact, this must be due to the representation be set to Outline in
the toolbar.
If you change it to Surface of Wireframe you should not see anymore the
outline.

Seb

On Thu, Sep 4, 2014 at 8:09 AM, Reuter, Michael A.
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

I’m looking for the option that turns off the outline in the 3D panel in
the Quad View in ParaView git-master. This used to be in the view
settings
dialog, but that no longer exists and the settings dialog doesn’t seem
to
have it unless I missed it. The Slice View has a similar option in the
Properties panel under Background, but nothing appears there for the
Quad
View.

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216tel:1-865-241-7216
Fax: 1-865-574-6080tel:1-865-574-6080
Email:
reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.govmailto:reute...@ornl.gov

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0001-Update-default-property-visibility-and-grouping-for-.patch

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http

[Paraview] Superbuild and OSX

2014-09-03 Thread Reuter, Michael A.

Hi,

I’m having trouble getting the git-master version of the Superbuild 
running on OSX (10.9) with clang (5.1). Setting the CMAKE_OSX_SYSROOT variable 
causes the following error during CMake (2.8.12.2) generation for the ParaView 
subproject: 

-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler using: Ninja
-- Check for working C compiler using: Ninja -- broken
CMake Error at /Applications/CMake 
2.8-12.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:61 
(message):
  The C compiler /usr/bin/cc is not able to compile a simple test program.

  It fails with the following output:

   Change Dir: 
/Users/2zr/build/ParaView-Superbuild/paraview/src/paraview-build/CMakeFiles/CMakeTmp

  Run Build Command:/usr/local/bin/ninja cmTryCompileExec4050157075

  [1/2] Building C object
  CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o

  FAILED: /usr/bin/cc -fPIC -arch x86_64 -mmacosx-version-min=10.9
  
-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
  -o CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o -c
  testCCompiler.c

  clang: error: unknown argument:
  
'-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk'
  [-Wunused-command-line-argument-hard-error-in-future]

  clang: note: this will be a hard error (cannot be downgraded to a warning)
  in the future

  ninja: build stopped: subcommand failed.

Even if I empty the CMAKE_OSX_SYSROOT variable, the system still tries to pass 
an empty -sysroot flag to clang causing it to choke. I removed the sysroot flag 
from the top-level CMakeLists.txt, but then the ParaView CMake setup fails for 
a reason I can’t seem to understand. I’m attaching the log showing the CMake 
output. The only obvious thing I see is the Fortran compiler. Is that required?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov

{\rtf1\ansi\ansicpg1252\cocoartf1265\cocoasubrtf210
{\fonttbl\f0\froman\fcharset0 Times-Roman;}
{\colortbl;\red255\green255\blue255;}
\margl1440\margr1440\vieww10800\viewh8400\viewkind0
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural

\f0\fs36 \cf0 \cb1 \CocoaLigature0 -- The C compiler identification is Clang 5.1.0\
-- The CXX compiler identification is Clang 5.1.0\
-- Check for working C compiler using: Ninja\
-- Check for working C compiler using: Ninja -- works\
-- Detecting C compiler ABI info\
-- Detecting C compiler ABI info - done\
-- Check for working CXX compiler using: Ninja\
-- Check for working CXX compiler using: Ninja -- works\
-- Detecting CXX compiler ABI info\
-- Detecting CXX compiler ABI info - done\
-- Found Git: /usr/local/bin/git (found version 1.8.4) \
-- Determined Source Version : 4.2.0-RC1\
-- Looking for a Fortran compiler\
-- Looking for a Fortran compiler - NOTFOUND\
-- Looking for Q_WS_X11\
-- Looking for Q_WS_X11 - not found\
-- Looking for Q_WS_WIN\
-- Looking for Q_WS_WIN - not found\
-- Looking for Q_WS_QWS\
-- Looking for Q_WS_QWS - not found\
-- Looking for Q_WS_MAC\
-- Looking for Q_WS_MAC - found\
-- Looking for QT_MAC_USE_COCOA\
-- Looking for QT_MAC_USE_COCOA - found\
-- Found Qt4: /usr/local/bin/qmake (found suitable version 4.8.6, minimum required is 4.7.0) \
-- Performing Test Support for 64 bit file systems\
-- Performing Test Support for 64 bit file systems - Success\
-- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON\
-- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON - Success\
-- Check if the system is big endian\
-- Searching 16 bit integer\
-- Looking for sys/types.h\
-- Looking for sys/types.h - found\
-- Looking for stdint.h\
-- Looking for stdint.h - found\
-- Looking for stddef.h\
-- Looking for stddef.h - found\
-- Check size of unsigned short\
-- Check size of unsigned short - done\
-- Using unsigned short\
-- Check if the system is big endian - little endian\
-- Looking for include file pthread.h\
-- Looking for include file pthread.h - found\
-- Looking for pthread_create\
-- Looking for pthread_create - found\
-- Found Threads: TRUE  \
-- Looking for C++ include iostream\
-- Looking for C++ include iostream - found\
-- Check for STD namespace\
-- Check for STD namespace - found\
-- Check for ANSI scope\
-- Check for ANSI scope - found\
-- Check for sstream\
-- Check for sstream - found\
-- Check size of int\
-- Check size of int - done\
-- Check size of long\
-- Check size of long - done\
-- Check size of char\
-- Check size of char - done\
-- Check size of short\
-- Check size of short - done\
-- Check size of float\
-- Check size of float - done\
-- Check size of double\
-- Check size of double - done\
-- Check size of long long\
-- Check size of long long -

[Paraview] Superbuild and Windows

2014-09-03 Thread Reuter, Michael A.

Hi,

I'm having an issue with the ParaView Superbuild on Windows
(VS2012). I get this error during the build process:

322 Compiling Python package 'pygments'

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\filters
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\formatters
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\lexers
...

322 Listing
C:/Users/2zr/Build/ParaView-Superbuild/paraview/src/paraview-build/lib/site-packages/pygments\styles
...

322 ImportError: No module named site

9C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5): error
MSB6006: cmd.exe exited with code 1.
[C:\Users\2zr\Build\ParaView-Superbuild\paraview.vcxproj]

322
322Build FAILED.

However, the site module exists when I run python. I'm building from a script
so I can control the environment. Everything else seems to build just fine.
However, nothing appears in the install directory for cpack to find. I can't
tell if this build error is disrupting the process or something else is going
wrong. What controls the pygments build so I can shut it off for now?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov

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Re: [Paraview] Superbuild and OSX

2014-09-03 Thread Reuter, Michael A.

This gets around the clang argument problem, but the ParaView CMake 
configuration step still fails for an unknown reason.

M

On Sep 3, 2014, at 10:28 AM, Utkarsh Ayachit 
utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com wrote:

Cherry-pick this fix for now : http://review.source.kitware.com/#/c/16665/
It'll go into master soon.

Ben, anything this fix is waiting on?

Utkarsh

On Wed, Sep 3, 2014 at 9:42 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

   I’m having trouble getting the git-master version of the Superbuild 
running on OSX (10.9) with clang (5.1). Setting the CMAKE_OSX_SYSROOT variable 
causes the following error during CMake (2.8.12.2) generation for the ParaView 
subproject:

-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler using: Ninja
-- Check for working C compiler using: Ninja -- broken
CMake Error at /Applications/CMake 
2.8-12.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:61 
(message):
 The C compiler /usr/bin/cc is not able to compile a simple test program.

 It fails with the following output:

  Change Dir: 
/Users/2zr/build/ParaView-Superbuild/paraview/src/paraview-build/CMakeFiles/CMakeTmp

 Run Build Command:/usr/local/bin/ninja cmTryCompileExec4050157075

 [1/2] Building C object
 CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o

 FAILED: /usr/bin/cc -fPIC -arch x86_64 -mmacosx-version-min=10.9
 
-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
 -o CMakeFiles/cmTryCompileExec4050157075.dir/testCCompiler.c.o -c
 testCCompiler.c

 clang: error: unknown argument:
 
'-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk'
 [-Wunused-command-line-argument-hard-error-in-future]

 clang: note: this will be a hard error (cannot be downgraded to a warning)
 in the future

 ninja: build stopped: subcommand failed.

Even if I empty the CMAKE_OSX_SYSROOT variable, the system still tries to pass 
an empty -sysroot flag to clang causing it to choke. I removed the sysroot flag 
from the top-level CMakeLists.txt, but then the ParaView CMake setup fails for 
a reason I can’t seem to understand. I’m attaching the log showing the CMake 
output. The only obvious thing I see is the Fortran compiler. Is that required?

Thanks,
M

Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov


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[Paraview] Programmatic access to Probe Location point

2013-05-20 Thread Reuter, Michael A.

Hi,

I'm trying to programmatically (C++) access the point coordinates displayed by 
the property panel widget after the p key is pressed. I have a pqPipelineSource 
pointer from when I created the Probe Location filter, but I can't seem to find 
any properties (tried Point, Center, WorldPosition) on the proxy that work. I 
also tried accessing those properties via the source proxy, but no luck either. 
If the proxy has the information, what is the correct property name? If not, 
where do I need to be looking?

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov
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Re: [Paraview] Packaging ParaView

2013-04-22 Thread Reuter, Michael A.

I tried the superbuild route and started simple by making only two
modifications: Changing the ParaView git tag to v3.98.1 and setting the
PARAVIEW_BUILD_QT_GUI to ON but not enabling Qt. OSX worked like charm and
the resulting package works. When I went to Windows, the package wouldn't
go through the install step. I chased my tail for a bit and finally found
the problem. We have to build PV without Python due an incompatibility
between PV and our software (haven't had time to debug yet). However, the
Windows install step was choking on pvbatch and pvpython not being
present. I found that the Projects/win32/paraview.bundle.cmake file wasn't
properly trapped for that. Once I fixed that, everything went smoothly and
the package works. I'm attaching the patch.

Cheers,
M


On 4/16/13 9:06 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Michael,

Superbuild can indeed be customized to suit your needs. However,
you'll have to start with a new fork of the repo. As the wiki
explains, http://paraview.org/Wiki/ParaView/Superbuild, the Superbuild
simply builds all needed projects and then builds paraview (Look at
paraview.cmake). It also include rules for each of OS to create a
bundle/package (paraview.bundle.cmake). Create a new fork with just
paraview.cmake, paraview.build.cmake, paraview.bundle.common.cmake
(and the fixup scripts for OSX) and then customize these files as per
your needs i.e. tell ParaView to use Qt/HDF from your build, adjust
paraview.bundle.cmake to package extra dependencies, among others.

You can edit the top-level CMakeLists.txt to remove the include(..)
calls to dependencies you are no longer building as part of the
superbuild (or add new ones).

Hope that helps. Feel free to holler if you run into issues or need
further explanations.

Utkarsh


On Mon, Apr 15, 2013 at 3:18 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm trying to package ParaView with our build options, but it looks
like the CPackParaViewConfig.cmake file is no longer available in
3.98.1, unless I missed a CMake variable. I've been looking at two ways
to handle this: superbuild and rebranding. I really don't need to
rebrand ParaView, as we aren't wrapping in any new functionality. So, I
was thinking of going with the superbuild. Can the superbuild be made to
only package ParaView provided libraries and plugins? Our analysis
package which uses ParaView functionality already provides many of the
same dependencies (Qt, HDF) and we build ParaView against these.
Therefore, we don't need to duplicate them in the installation package.

 Thanks,
 M

 Dr. Michael Reuter
 Data Analysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov
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win32-pv-bundle.patch
Description: win32-pv-bundle.patch
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Re: [Paraview] Superbuild 3.98.1

2013-04-19 Thread Reuter, Michael A.

Find the ParaView git line in the versions.cmake file and change the GIT_TAG to 
v3.98.1. That worked for me.

Cheers,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov

From: Angelini, Richard C CIV USARMY ARL (RickUS) 
richard.c.angelini@mail.milmailto:richard.c.angelini@mail.mil
Date: Friday, April 19, 2013 8:39 AM
To: paraview@paraview.orgmailto:paraview@paraview.org 
paraview@paraview.orgmailto:paraview@paraview.org
Subject: [Paraview] Superbuild 3.98.1

I've been playing around with SuperBuild and it seems to working correct.  But, 
it also seems to be pulling the most recent source updates from the git 
repository.   Is there a way use SuperBuild to only build the most recent 
production release (3.98.1)?

Thanks



Rick Angelini

USArmy Research Laboratory
CISD/HPC Architectures Team
Building 120 Cube 315
Phone:  410-278-6266
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[Paraview] Packaging ParaView

2013-04-15 Thread Reuter, Michael A.

Hi,

I'm trying to package ParaView with our build options, but it looks like the 
CPackParaViewConfig.cmake file is no longer available in 3.98.1, unless I 
missed a CMake variable. I've been looking at two ways to handle this: 
superbuild and rebranding. I really don't need to rebrand ParaView, as we 
aren't wrapping in any new functionality. So, I was thinking of going with the 
superbuild. Can the superbuild be made to only package ParaView provided 
libraries and plugins? Our analysis package which uses ParaView functionality 
already provides many of the same dependencies (Qt, HDF) and we build ParaView 
against these. Therefore, we don't need to duplicate them in the installation 
package.

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov
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Re: [Paraview] State files and plugins

2013-04-03 Thread Reuter, Michael A.

Hi Seb,

I looked at this a bit closer and I see that when loading the state file the 
RequestInformation function is being executed for our plugins, but RequestData 
is not. Is this the expected behavior or is something wrong with our plugins?

Thanks,
M

From: Sebastien Jourdain 
sebastien.jourd...@kitware.commailto:sebastien.jourd...@kitware.com
Date: Thursday, March 28, 2013 5:38 PM
To: Michael Reuter reute...@ornl.govmailto:reute...@ornl.gov
Cc: paraview@paraview.orgmailto:paraview@paraview.org 
paraview@paraview.orgmailto:paraview@paraview.org
Subject: Re: [Paraview] State files and plugins

When a state file is read, ParaView will create the proxy the same way as they 
used to be with the same set of values for their properties.
That's about it, nothing special regarding the RequestInformation and 
RequestData.

The only thing that could happen is if your plugin classes expect a certain 
ordering in property setting and so on, this may cause some issue, as we 
basically set the state in a 'random' order.

Seb


On Thu, Mar 28, 2013 at 1:27 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi,

I have a dumb question about state files. When a plugin is called while loading 
a state file, what function calls are executed on the plugin? I'm specifically 
wondering about RequestInformation and RequestData.

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216tel:1-865-241-7216
Fax: 1-865-574-6080tel:1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov
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[Paraview] State files and plugins

2013-03-28 Thread Reuter, Michael A.

Hi,

I have a dumb question about state files. When a plugin is called while loading 
a state file, what function calls are executed on the plugin? I'm specifically 
wondering about RequestInformation and RequestData.

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov
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[Paraview] Outline in Slice View

2013-01-15 Thread Reuter, Michael A.

Hi,

Is there an option to turn off the outline shown in the Slice View? If not, can 
one be added?

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov
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[Paraview] Pick object

2013-01-14 Thread Reuter, Michael A.

Hi,

I'm trying to figure out what the pick object button on the ParaView GUI does. 
I have been hunting around for documentation, but searching both the wiki and 
inline PV documentation turns up no references. Can anyone tell me how to use 
it properly or point me to missed documentation? The button seems to do nothing 
for me no matter how I try to use it.

Thanks,
M

Dr. Michael Reuter
Data Analysis and Visualization Group
Neutron Data Analysis and Visualization Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.gov
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Re: [Paraview] Pick object

2013-01-14 Thread Reuter, Michael A.

Thanks for the clarification. That's not what I was hoping it would do.
Question forthcoming.

Cheers,
M



On 1/14/13 2:00 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Michael,

Pick simply makes the source/filter active in the pipeline browser.

Utkarsh

On Mon, Jan 14, 2013 at 12:01 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm trying to figure out what the pick object button on the ParaView
GUI does. I have been hunting around for documentation, but searching
both the wiki and inline PV documentation turns up no references. Can
anyone tell me how to use it properly or point me to missed
documentation? The button seems to do nothing for me no matter how I try
to use it.

 Thanks,
 M

 Dr. Michael Reuter
 Data Analysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov
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Re: [Paraview] External plugin menu behavior

2013-01-03 Thread Reuter, Michael A.

I tried Plot Over Line, Clip and Histogram. Now those are gone from their
original menus.

M



On 1/3/13 3:20 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Sounds like a bug to me. Any details on how I could try to reproduce
this? If you could reproduce with one of the packaged plugins or
examples, that'd be even better.

Utkarsh

On Thu, Jan 3, 2013 at 3:04 PM, Michael Reuter reute...@ornl.gov wrote:
 Hi,

 I have a set of external plugins that we have made a menu entry
that is
 visible in the ParaView GUI Filters menu. I'm seeing a strange problem
in
 ParaView 3.98. When I use a plugin for the first time, all is fine.
However,
 when I exit PV, restart and go to use the same plugin, the entry is
missing
 from our menu. It is in the Filters/Recent menu entry and is still
 searchable. Does anyone know why the original menu entry would be
deleted? I
 blew away my config file and tried again, but I see the same behavior.

 Thanks,
 M

 --
 Dr. Michael Reuter
 Data Analaysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov

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Re: [Paraview] Connecting glyph filter with data

2013-01-02 Thread Reuter, Michael A.

Hi Utkarsh,

I love one line changes. Works like a charm.

Thanks,
M


On 1/2/13 3:09 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Michael,

In vtkPeaksReader::RequestData, instead of
glyphFilter-SetSourceData(sphere-GetOutput()), do

EITHER
   glyphFilter-SetSourceConnection(sphere-GetOutputPort())
OR
  sphere-Update()
  glyphFilter-SetSourceData(sphere-GetOutput())

Unlike the old SetInput()/SetSource() methods,
SetInputData()/SetSourceData() don't set the pipeline connections
between the produces and consumers. So when you called
SetSourceData(sphere-GetOutput()), the current state of the output of
vtkSphereSource was passed on to the glyph filter. Since the
SphereSource hadn't executed yet, it was empty. So we can fix the
problem by either setting up a true pipeline connection (using
SetSourceConnection) or by ensuring that the SphereSource has produced
valid data by calling sphere-Update()

Utkarsh


On Wed, Jan 2, 2013 at 10:50 AM, Michael Reuter reute...@ornl.gov wrote:
 Hi,

 I have a plugin which I'm trying to get working in ParaView 3.98.
The
 source code for the plugin can be found here:
 
http://github.com/mantidproject/mantid/blob/6315_build_pv_398/Code/Mantid
/Vates/ParaviewPlugins/ParaViewReaders/PeaksReader/vtkPeaksReader.cxx.
 After fixing function calls on the vtkPVGlyphFilter to get it to compile
 (lines 96 and 97), the plugin crashes at the vtkGlyphFilter::Update()
call
 on vtkPoints::GetNumberOfPoints(). I checked the structuredMesh (it's
 actually a vtkUnstructuredGrid) object used in the
 vtkGlyphFilter::SetInputData() call and found that it does contain data
 points (40 for the particular file I'm looking at).
 I did some digging about the vtkGlyphFilter::SetInputData() and
found
 that it no longer sets up a pipeline connection. I think this might be
the
 cause of the glyph filter not finding any data, but I'm unsure.
However, I'm
 having trouble figuring out how to use
vtkGlyphFilter::SetInputConnection()
 and the structuredMesh object. Is there anyway to make this work using
the
 structuredMesh object or is the best thing to make another plugin to
create
 the structuredMesh and then do
 vtkGlyphFilter::SetInputConnection(newPlugin-GetOutputPort()) and
remove
 the vtkGlyphFilter::SetInputData() call?

 Thanks,
 M

 --
 Dr. Michael Reuter
 Data Analaysis and Visualization Group
 Neutron Data Analysis and Visualization Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.gov


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Re: [Paraview] Setting a color map

2011-06-24 Thread Reuter, Michael A.

Thanks for the tip on the LUT modification. I finally got to put this into
action and it work great.

M

On 6/13/11 4:33 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:


I couldn't find any code that converts a pqColorMapModel to properties
on the LUT proxy directly. However, once you get access to the
existing LUT proxy on the representation, it shouldn't be too hard to
map the scalar+color values from the pqColorMapModel to the RGBPoints
on the LUT proxy. To access the LUT proxy you can use
pqDataRepresentation::getLookupTableProxy().  There's code in
pqColorScaleEditor::loadPreset that may help, but it doesn't update
the proxy directly.

Utkarsh

On Mon, Jun 13, 2011 at 10:38 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
 My current situation is that the user has already chosen an array to
color
 by. I'm then using the handy dialog box provided by the
 pqColorPresetManager to allow the user to select a new colormap. I
 retrieve the pqColorMapModel from the selection and then I want to apply
 the new colormap to the current color array.

 Cheers,
 M




 On 6/13/11 9:08 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

Out of curiosity, how was the pqColorMapModel created? It's generally
easier to directly manipulate the properties of a lookup table proxy.
To provide you with the easiest path forward, I was wondering what
your setup is. Has the user chosen the array to color by and now you
want to change the  existing LUT's properties or do you want to setup
a brand new LUT for this representation. In case of former, any other
representation being colored with the same array will automatically
use your changed LUT, which won't be the case with the latter.

Utkarsh

On Fri, Jun 10, 2011 at 1:35 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

  I have a pqColorMapModel that I want to programmatically (C++) set on
a pqPipelineRepresentation. I've been looking at the code and thought
that the way forward was via pqScalarsToColors and setting the
LookupTable property on the representation. However, I don't see a way
to translate between the pqColorMapModel and pqScalarsToColors. What is
the correct way to handle this situation?

 Thanks,
 M


 Dr. Michael Reuter
 Scientific Data Analysis Group
 Neutron Scattering Science Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.govmailto:reute...@ornl.gov

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Re: [Paraview] Setting a color map

2011-06-13 Thread Reuter, Michael A.

My current situation is that the user has already chosen an array to color
by. I'm then using the handy dialog box provided by the
pqColorPresetManager to allow the user to select a new colormap. I
retrieve the pqColorMapModel from the selection and then I want to apply
the new colormap to the current color array.

Cheers,
M




On 6/13/11 9:08 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Out of curiosity, how was the pqColorMapModel created? It's generally
easier to directly manipulate the properties of a lookup table proxy.
To provide you with the easiest path forward, I was wondering what
your setup is. Has the user chosen the array to color by and now you
want to change the  existing LUT's properties or do you want to setup
a brand new LUT for this representation. In case of former, any other
representation being colored with the same array will automatically
use your changed LUT, which won't be the case with the latter.

Utkarsh

On Fri, Jun 10, 2011 at 1:35 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

  I have a pqColorMapModel that I want to programmatically (C++) set on
a pqPipelineRepresentation. I've been looking at the code and thought
that the way forward was via pqScalarsToColors and setting the
LookupTable property on the representation. However, I don't see a way
to translate between the pqColorMapModel and pqScalarsToColors. What is
the correct way to handle this situation?

 Thanks,
 M


 Dr. Michael Reuter
 Scientific Data Analysis Group
 Neutron Scattering Science Division
 Oak Ridge National Laboratory

 Office: 1-865-241-7216
 Fax: 1-865-574-6080
 Email: reute...@ornl.govmailto:reute...@ornl.gov

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[Paraview] Setting a color map

2011-06-10 Thread Reuter, Michael A.

Hi,

 I have a pqColorMapModel that I want to programmatically (C++) set on a 
pqPipelineRepresentation. I've been looking at the code and thought that the 
way forward was via pqScalarsToColors and setting the LookupTable property on 
the representation. However, I don't see a way to translate between the 
pqColorMapModel and pqScalarsToColors. What is the correct way to handle this 
situation?

Thanks,
M


Dr. Michael Reuter
Scientific Data Analysis Group
Neutron Scattering Science Division
Oak Ridge National Laboratory

Office: 1-865-241-7216
Fax: 1-865-574-6080
Email: reute...@ornl.govmailto:reute...@ornl.gov

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Re: [Paraview] Applying filters in sample app

2011-03-29 Thread Reuter, Michael A.

Thanks for the tip. I got it to connect and work.

Cheers,
M



On 3/29/11 10:56 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

The plane widget has a setVisiblity slot, you can connect the
checkbox to that slot.

Utkarsh

On Tue, Mar 29, 2011 at 10:16 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi Utkarsh,

  Thank you for the code. It works fine and gets me almost to where I
want.
 When I use the implicit plane with the cut filter, I'm pulling up an
 object inspector widget for it. Is there a way I can attach the
visibility
 of the plane to the check box in the inspector?

 Cheers,
 M



 On 3/25/11 7:54 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

Guys,

Attached is a patch that demonstrates the use of 3D widgets for
manipulating clip plane.

Utkarsh

On Fri, Mar 25, 2011 at 8:06 AM,  owen.arn...@stfc.ac.uk wrote:
 Hi Utkarsh,

 I'd also like to see a coded example of this in action. If you have
something, could you post it to the list.

 Many thanks,

 Owen.

 -Original Message-
 From: paraview-boun...@paraview.org
[mailto:paraview-boun...@paraview.org] On Behalf Of Reuter, Michael A.
 Sent: 21 March 2011 14:08
 To: Utkarsh Ayachit
 Cc: paraview@paraview.org
 Subject: Re: [Paraview] Applying filters in sample app

 Hi Utkarsh,

  Thanks for the response. It would be greatly appreciated if you have
the
 time to provide some code for setting up the implicit plane. I have
 continued to try and diagnose things myself without much luck.

 Thanks,
 M

 On 3/18/11 10:49 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:


Michael,

The interactive-widgets such as implicit plane widget are created by
the Properties panel to help user change some of the properties for
the filter. So yes, if your example, you will not see the implicit
plane widget at all. You'll have to manually create it and set it up
to update the properties of the clip filter as the user moves it. It
can be a bit tricky. But maybe I can hack up some code in your example
to show the implicit plane if you'd like.

Utkarsh

On Wed, Mar 16, 2011 at 2:01 PM, Reuter, Michael A.
reute...@ornl.gov
wrote:
 Hi Utkarsh,

  Thanks, that did the trick. I'm also trying to get an
ImplicitPlaneWidget
 (IPW) up at the same time. Is the default behavior for the IPW to be
 invisible?

 M


 On 3/15/11 3:10 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

You're simply missing a line to hide the previous representation. I
just added in mpMainWindow::onCutButtonClicked before the render()
call and the slice shows up.

   this-ActiveSourceRepr-setVisible(false);

Utkarsh

On Tue, Mar 15, 2011 at 12:17 PM, Reuter, Michael A.
reute...@ornl.gov
wrote:
 Hi,

 I'm working on a sample application and I've been trying to make a
cut
appear on the data that is being viewed. I've followed the
methodology
used in the QuickContour application in my application, but the cut
never appears on the data view. I'm using the data file associated
with
the QuickContour application to test my application. I'm guessing
I'm
just not understanding the required setup logic for behaviors and
reactions in order to get the cut to apply. If anyone can see where
I'm
being dumb, my code is located here:
https://github.com/mareuter/PVMockupGui. The cut is being applied
in
the
mpMainWindow class in mpMainWindow::onCutButtonClicked. I am
currently
compiling against the ParaView git master on Ubuntu.

 Thanks,
 M


 Dr. Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory


 Office: 1-865-241-7216

 Fax: 1-865-574-6080

 Email: reute...@ornl.gov

 ___
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Re: [Paraview] Applying filters in sample app

2011-03-21 Thread Reuter, Michael A.

Hi Utkarsh,

 Thanks for the response. It would be greatly appreciated if you have the
time to provide some code for setting up the implicit plane. I have
continued to try and diagnose things myself without much luck.

Thanks,
M

On 3/18/11 10:49 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:


Michael,

The interactive-widgets such as implicit plane widget are created by
the Properties panel to help user change some of the properties for
the filter. So yes, if your example, you will not see the implicit
plane widget at all. You'll have to manually create it and set it up
to update the properties of the clip filter as the user moves it. It
can be a bit tricky. But maybe I can hack up some code in your example
to show the implicit plane if you'd like.

Utkarsh

On Wed, Mar 16, 2011 at 2:01 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi Utkarsh,

  Thanks, that did the trick. I'm also trying to get an
ImplicitPlaneWidget
 (IPW) up at the same time. Is the default behavior for the IPW to be
 invisible?

 M


 On 3/15/11 3:10 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

You're simply missing a line to hide the previous representation. I
just added in mpMainWindow::onCutButtonClicked before the render()
call and the slice shows up.

   this-ActiveSourceRepr-setVisible(false);

Utkarsh

On Tue, Mar 15, 2011 at 12:17 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm working on a sample application and I've been trying to make a cut
appear on the data that is being viewed. I've followed the methodology
used in the QuickContour application in my application, but the cut
never appears on the data view. I'm using the data file associated with
the QuickContour application to test my application. I'm guessing I'm
just not understanding the required setup logic for behaviors and
reactions in order to get the cut to apply. If anyone can see where I'm
being dumb, my code is located here:
https://github.com/mareuter/PVMockupGui. The cut is being applied in
the
mpMainWindow class in mpMainWindow::onCutButtonClicked. I am currently
compiling against the ParaView git master on Ubuntu.

 Thanks,
 M


 Dr. Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory


 Office: 1-865-241-7216

 Fax: 1-865-574-6080

 Email: reute...@ornl.gov

 ___
 Powered by www.kitware.com

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[Paraview] vtkImagePlaneWidget

2011-03-17 Thread Reuter, Michael A.

Hi,

Has anyone tried to pull vtkImagePlaneWidget into ParaView before?

Thanks,
M


Dr. Michael Reuter

Scientific Data Analysis Group

Neutron Scattering Science Division

Oak Ridge National Laboratory


Office: 1-865-241-7216

Fax: 1-865-574-6080

Email: reute...@ornl.gov

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Re: [Paraview] Applying filters in sample app

2011-03-16 Thread Reuter, Michael A.

Hi Utkarsh,

 Thanks, that did the trick. I'm also trying to get an ImplicitPlaneWidget
(IPW) up at the same time. Is the default behavior for the IPW to be
invisible? 

M


On 3/15/11 3:10 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

You're simply missing a line to hide the previous representation. I
just added in mpMainWindow::onCutButtonClicked before the render()
call and the slice shows up.

   this-ActiveSourceRepr-setVisible(false);

Utkarsh

On Tue, Mar 15, 2011 at 12:17 PM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm working on a sample application and I've been trying to make a cut
appear on the data that is being viewed. I've followed the methodology
used in the QuickContour application in my application, but the cut
never appears on the data view. I'm using the data file associated with
the QuickContour application to test my application. I'm guessing I'm
just not understanding the required setup logic for behaviors and
reactions in order to get the cut to apply. If anyone can see where I'm
being dumb, my code is located here:
https://github.com/mareuter/PVMockupGui. The cut is being applied in the
mpMainWindow class in mpMainWindow::onCutButtonClicked. I am currently
compiling against the ParaView git master on Ubuntu.

 Thanks,
 M


 Dr. Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory


 Office: 1-865-241-7216

 Fax: 1-865-574-6080

 Email: reute...@ornl.gov

 ___
 Powered by www.kitware.com

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[Paraview] Applying filters in sample app

2011-03-15 Thread Reuter, Michael A.

Hi,

I'm working on a sample application and I've been trying to make a cut appear 
on the data that is being viewed. I've followed the methodology used in the 
QuickContour application in my application, but the cut never appears on the 
data view. I'm using the data file associated with the QuickContour application 
to test my application. I'm guessing I'm just not understanding the required 
setup logic for behaviors and reactions in order to get the cut to apply. If 
anyone can see where I'm being dumb, my code is located here: 
https://github.com/mareuter/PVMockupGui. The cut is being applied in the 
mpMainWindow class in mpMainWindow::onCutButtonClicked. I am currently 
compiling against the ParaView git master on Ubuntu.

Thanks,
M


Dr. Michael Reuter

Scientific Data Analysis Group

Neutron Scattering Science Division

Oak Ridge National Laboratory


Office: 1-865-241-7216

Fax: 1-865-574-6080

Email: reute...@ornl.gov

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[Paraview] DIY Application problem

2011-03-04 Thread Reuter, Michael A.

Hi,

I'm trying to get the DIY application up and running. I have successfully got 
it to compile and run, but it doesn't seem to do anything when loading the 
sample data. At first I thought that it was due to not having a running server 
before loading the file, so I created a server instance, connected the client 
and then loaded the data again. In spite of this, nothing shows up on the 
screen and none of the drop down boxes show anything interesting. I'm not 
receiving any error messages from the program. I can load the sample data into 
ParaView just fine. Is there a debug flag I can set or pass to the DIY program 
to get some information about what is going on?  I am running on 64-bit Ubuntu 
with a git copy of ParaView.

Thanks,
Michael


Dr. Michael Reuter

Scientific Data Analysis Group

Neutron Scattering Science Division

Oak Ridge National Laboratory


Office: 1-865-241-7216

Fax: 1-865-574-6080

Email: reute...@ornl.gov

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Re: [Paraview] DIY Application problem

2011-03-04 Thread Reuter, Michael A.

Hi Utkarsh,

 I'm running the code that is given on the ParaView wiki:
http://www.paraview.org/Wiki/IEEE_Vis10_DIY_Vis_Application_-_ParaView,
specifically for the QuickContour example. I get similar behavior from the
SimpleApp example. I have made no modifications to the code.

Cheers,
M


On 3/4/11 11:19 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:

Is it possible to share you code? Pretty sure you are missing an
equivalent of accept somewhere.

Utkarsh

On Fri, Mar 4, 2011 at 10:32 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm trying to get the DIY application up and running. I have
successfully got it to compile and run, but it doesn't seem to do
anything when loading the sample data. At first I thought that it was
due to not having a running server before loading the file, so I created
a server instance, connected the client and then loaded the data again.
In spite of this, nothing shows up on the screen and none of the drop
down boxes show anything interesting. I'm not receiving any error
messages from the program. I can load the sample data into ParaView just
fine. Is there a debug flag I can set or pass to the DIY program to get
some information about what is going on?  I am running on 64-bit Ubuntu
with a git copy of ParaView.

 Thanks,
 Michael


 Dr. Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory


 Office: 1-865-241-7216

 Fax: 1-865-574-6080

 Email: reute...@ornl.gov

 ___
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Re: [Paraview] DIY Application problem

2011-03-04 Thread Reuter, Michael A.

I applied the patch and the DIY application now runs correctly. Thanks for
fixing this.

M

On 3/4/11 12:54 PM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote:


Ah, looks like there was a bug that got introduced in git-master. I've
committed a fix. Attached is a patch for the same.

Thanks for reporting.

Utkarsh

On Fri, Mar 4, 2011 at 11:48 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi Utkarsh,

  I'm running the code that is given on the ParaView wiki:
 http://www.paraview.org/Wiki/IEEE_Vis10_DIY_Vis_Application_-_ParaView,
 specifically for the QuickContour example. I get similar behavior from
the
 SimpleApp example. I have made no modifications to the code.

 Cheers,
 M


 On 3/4/11 11:19 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com
wrote:

Is it possible to share you code? Pretty sure you are missing an
equivalent of accept somewhere.

Utkarsh

On Fri, Mar 4, 2011 at 10:32 AM, Reuter, Michael A. reute...@ornl.gov
wrote:
 Hi,

 I'm trying to get the DIY application up and running. I have
successfully got it to compile and run, but it doesn't seem to do
anything when loading the sample data. At first I thought that it was
due to not having a running server before loading the file, so I
created
a server instance, connected the client and then loaded the data again.
In spite of this, nothing shows up on the screen and none of the drop
down boxes show anything interesting. I'm not receiving any error
messages from the program. I can load the sample data into ParaView
just
fine. Is there a debug flag I can set or pass to the DIY program to get
some information about what is going on?  I am running on 64-bit Ubuntu
with a git copy of ParaView.

 Thanks,
 Michael


 Dr. Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory


 Office: 1-865-241-7216

 Fax: 1-865-574-6080

 Email: reute...@ornl.gov

 ___
 Powered by www.kitware.com

 Visit other Kitware open-source projects at
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 Follow this link to subscribe/unsubscribe:
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Re: [Paraview] New HDF5 based reader

2010-08-20 Thread Reuter, Michael A.

Thanks for the fix. My reader can now open the NeXus file, so I can continue to 
make it display the data. Thanks for all the help.

Michael

From: Dave Partyka [mailto:dave.part...@kitware.com]
Sent: Tuesday, August 10, 2010 15:09
To: Reuter, Michael A.
Cc: Utkarsh Ayachit; paraview@paraview.org
Subject: Re: [Paraview] New HDF5 based reader

Hi Michael,

This compile error should be fixed now. You should update Paraview to the 
latest version and also do a 'git submodule update' to update Xdmf.

Commit

1ea84e6b53e6290f28993f64a844ca8fadbfbae8

Include string.h for XdmfSetStringMacro

We need this header for strcmp in the macro implementation.  This error
went unnoticed previously because places that used XdmfSetStringMacro
happened to include string.h for another reason.

On Tue, Aug 10, 2010 at 1:21 PM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
Hi Utkarsh,

   Thanks for the pointer on the cmake option as I somehow missed that one. 
However,
using the PARAVIEW_USE_SYSTEM_HDF5 flag, cmake pointed at the system HDF5 
information and a clean build, the following compile time error occurs:

Scanning dependencies of target Xdmf
[ 47%] Building CXX object 
Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfArray.cxx.o
In file included from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:28,
from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.cxx:25:
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h: In member 
function 'XdmfInt32 XdmfDataDesc::SetHeavyDataSetName(const char*)':
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strcmp' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strlen' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strcpy' was not declared in this scope
In file included from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.cxx:25:
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h: In member 
function 'void XdmfArray::SetDataFromChars(char*)':
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:398: error: 
'strlen' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:399: error: 
'strcpy' was not declared in this scope
make[2]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfArray.cxx.o] Error 
1
make[1]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/all] Error 2
make: *** [all] Error 2

I did a little poking at the source code and it looks like the correct headers 
for the above functions are being included, but the compiler doesn't think so.

Michael

-Original Message-
From: Utkarsh Ayachit 
[mailto:utkarsh.ayac...@kitware.commailto:utkarsh.ayac...@kitware.com]
Sent: Monday, August 09, 2010 13:24
To: Reuter, Michael A.
Cc: paraview@paraview.orgmailto:paraview@paraview.org
Subject: Re: [Paraview] New HDF5 based reader

Hmm, looks like your plugin is linking against a system installed
HDF5. Did you change the ParaView to use the same? Otherwise ParaView
brings in its own version of HDF5 and the two can't work together. To
ensure that ParaView and your plugin uses the same HDF5, set the cmake
variable PARAVIEW_USE_SYSTEM_HDF5 to ON and then point CMake to the
installed hdf5.

Utkarsh

On Mon, Aug 9, 2010 at 11:59 AM, Reuter, Michael A. 
reute...@ornl.govmailto:reute...@ornl.gov wrote:
 Hi,

 I have been working at trying to get a NeXus
 (www.nexusformat.orghttp://www.nexusformat.org) file read into ParaView. 
 The NeXus format is HDF5
 based and this seems to be the source of the current problem that I'm
 encountering.  When I try to open a NeXus file via this call:

 NeXus::File *fh = new NeXus::File(filename, NXACC_READ);

 I get the backtrace that's attached to this email. The lowest level frame is
 given here:

 Program received signal SIGSEGV, Segmentation fault.

 0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6

 (gdb) bt

 #0  0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6

 .

 At first, this looked like an issue with the system HDF5 libraries, but I
 can put the above line into a standalone program, link it against the same
 libraries and I can open a file without any errors. I have searched the list
 archive for any enlightenment, but I didn't find this particular problem. Is
 there anything special about using HDF5 libraries in ParaView plugins that I
 missed in the documentation? I am running on Ubuntu 10.04 using the provided
 HDF5 libraries and I have compiled and linked the NeXus libraries against
 the same HDF5 libraries.

 I know about Xdmf and have tried that with success, but I do not want to go
 down the two file route, so I'd really like to get this reader working. I
 can provide more detailed information (like plugin source code, sample file

Re: [Paraview] New HDF5 based reader

2010-08-10 Thread Reuter, Michael A.

Hi Utkarsh,

Thanks for the pointer on the cmake option as I somehow missed that 
one. However, 
using the PARAVIEW_USE_SYSTEM_HDF5 flag, cmake pointed at the system HDF5 
information and a clean build, the following compile time error occurs:

Scanning dependencies of target Xdmf
[ 47%] Building CXX object 
Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfArray.cxx.o
In file included from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:28,
 from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.cxx:25:
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h: In member 
function 'XdmfInt32 XdmfDataDesc::SetHeavyDataSetName(const char*)':
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strcmp' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strlen' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:202: error: 
'strcpy' was not declared in this scope
In file included from 
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.cxx:25:
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h: In member 
function 'void XdmfArray::SetDataFromChars(char*)':
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:398: error: 
'strlen' was not declared in this scope
/home/2zr/src/ParaView-3.8.0/Utilities/Xdmf2/libsrc/XdmfArray.h:399: error: 
'strcpy' was not declared in this scope
make[2]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfArray.cxx.o] Error 
1
make[1]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/all] Error 2
make: *** [all] Error 2

I did a little poking at the source code and it looks like the correct headers 
for the above functions are being included, but the compiler doesn't think so.

Michael

-Original Message-
From: Utkarsh Ayachit [mailto:utkarsh.ayac...@kitware.com] 
Sent: Monday, August 09, 2010 13:24
To: Reuter, Michael A.
Cc: paraview@paraview.org
Subject: Re: [Paraview] New HDF5 based reader

Hmm, looks like your plugin is linking against a system installed
HDF5. Did you change the ParaView to use the same? Otherwise ParaView
brings in its own version of HDF5 and the two can't work together. To
ensure that ParaView and your plugin uses the same HDF5, set the cmake
variable PARAVIEW_USE_SYSTEM_HDF5 to ON and then point CMake to the
installed hdf5.

Utkarsh

On Mon, Aug 9, 2010 at 11:59 AM, Reuter, Michael A. reute...@ornl.gov wrote:
 Hi,



     I have been working at trying to get a NeXus
 (www.nexusformat.org) file read into ParaView. The NeXus format is HDF5
 based and this seems to be the source of the current problem that I'm
 encountering.  When I try to open a NeXus file via this call:



 NeXus::File *fh = new NeXus::File(filename, NXACC_READ);



 I get the backtrace that's attached to this email. The lowest level frame is
 given here:



 Program received signal SIGSEGV, Segmentation fault.

 0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6

 (gdb) bt

 #0  0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6

 .



 At first, this looked like an issue with the system HDF5 libraries, but I
 can put the above line into a standalone program, link it against the same
 libraries and I can open a file without any errors. I have searched the list
 archive for any enlightenment, but I didn't find this particular problem. Is
 there anything special about using HDF5 libraries in ParaView plugins that I
 missed in the documentation? I am running on Ubuntu 10.04 using the provided
 HDF5 libraries and I have compiled and linked the NeXus libraries against
 the same HDF5 libraries.



 I know about Xdmf and have tried that with success, but I do not want to go
 down the two file route, so I'd really like to get this reader working. I
 can provide more detailed information (like plugin source code, sample file
 etc.) to anyone who can help, but I don't want to spam the entire list with
 it right off the bat.



 Thanks,

 Michael

 ---

 Michael Reuter

 Scientific Data Analysis Group

 Neutron Scattering Science Division

 Oak Ridge National Laboratory







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[Paraview] New HDF5 based reader

2010-08-09 Thread Reuter, Michael A.

Hi,

I have been working at trying to get a NeXus 
(www.nexusformat.orghttp://www.nexusformat.org) file read into ParaView. The 
NeXus format is HDF5 based and this seems to be the source of the current 
problem that I'm encountering.  When I try to open a NeXus file via this call:

NeXus::File *fh = new NeXus::File(filename, NXACC_READ);

I get the backtrace that's attached to this email. The lowest level frame is 
given here:

Program received signal SIGSEGV, Segmentation fault.
0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6
(gdb) bt
#0  0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6
...

At first, this looked like an issue with the system HDF5 libraries, but I can 
put the above line into a standalone program, link it against the same 
libraries and I can open a file without any errors. I have searched the list 
archive for any enlightenment, but I didn't find this particular problem. Is 
there anything special about using HDF5 libraries in ParaView plugins that I 
missed in the documentation? I am running on Ubuntu 10.04 using the provided 
HDF5 libraries and I have compiled and linked the NeXus libraries against the 
same HDF5 libraries.

I know about Xdmf and have tried that with success, but I do not want to go 
down the two file route, so I'd really like to get this reader working. I can 
provide more detailed information (like plugin source code, sample file etc.) 
to anyone who can help, but I don't want to spam the entire list with it right 
off the bat.

Thanks,
Michael
---
Michael Reuter
Scientific Data Analysis Group
Neutron Scattering Science Division
Oak Ridge National Laboratory



***
Attempting to load /home/2zr/workspace/InElSxtalNeXus/libInElSxtalNeXus.so
Loaded shared library successfully. Now trying to validate that it's a ParaView 
plugin.
Plugin's signature: paraviewplugin|GNU|3.8
Plugin signature verification successful. This is definitely a ParaView plugin 
compiled with correct compiler for correct ParaView version.
Updating Shared Library Paths: 
/home/2zr/build/ParaView/bin:/home/2zr/build/ParaView/bin:/home/2zr/build/ParaView/bin:/home/2zr/workspace/InElSxtalNeXus
Plugin instance located successfully. Now loading components from the plugin 
instance based on the interfaces it implements.

Plugin Information:   
  Name: InElSxtalNeXus
  Version : 1.0
  ReqOnServer : 1
  ReqOnClient : 1
  ReqPlugins  :   ServerManager Plugin : Yes
  Python Plugin : No
Opening
Program received signal SIGSEGV, Segmentation fault.
0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6
(gdb) bt
#0  0x7fffd7a3da8b in H5FL_reg_malloc () from /usr/lib/libhdf5.so.6
#1  0x7fffd7a3dc18 in H5FL_reg_calloc () from /usr/lib/libhdf5.so.6
#2  0x7fffd7b7de3a in H5T_alloc () from /usr/lib/libhdf5.so.6
#3  0x7fffd7c67ed7 in H5TN_init_interface () from /usr/lib/libhdf5.so.6
#4  0x7fffd7b6e390 in ?? () from /usr/lib/libhdf5.so.6
#5  0x7fffd7b6d9aa in H5T_init () from /usr/lib/libhdf5.so.6
#6  0x7fffd797ea5d in H5_init_library () from /usr/lib/libhdf5.so.6
#7  0x7fffd7a0f070 in H5Eset_auto1 () from /usr/lib/libhdf5.so.6
#8  0x7fffd8115775 in NX5open (
filename=0x19c3850 /home/2zr/data/CNCS_800_rebin.nxs, am=1, 
pHandle=0x1) at napi5.c:144
#9  0x7fffd8a0 in NXinternalopen (
userfilename=0x1a47798 /home/2zr/data/CNCS_800_rebin.nxs, am=1, 
fileStack=value optimized out) at napi.c:405
#10 0x7fffd8111565 in nxiopen_ (
userfilename=0x1a47798 /home/2zr/data/CNCS_800_rebin.nxs, am=1, 
gHandle=0x7fffc130) at napi.c:291
#11 0x7fffd832e865 in File (this=value optimized out, filename=..., 
access=1) at NeXusFile.cpp:143
#12 0x7fffd8573b73 in vtkInElSxtalNeXus::Canreadfile(char const*) ()
   from /home/2zr/workspace/InElSxtalNeXus/libInElSxtalNeXus.so
#13 0x7fffd857399b in vtkInElSxtalNeXus::CanReadFile(char const*) ()
   from /home/2zr/workspace/InElSxtalNeXus/libInElSxtalNeXus.so
#14 0x7fffd857608f in vtkInElSxtalNeXusCommand(vtkClientServerInterpreter*, 
vtkObjectBase*, char const*, vtkClientServerStream const, 
vtkClientServerStream) () from 
/home/2zr/workspace/InElSxtalNeXus/libInElSxtalNeXus.so
#15 0x7fffe93352e2 in 
vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream const, 
int) ()
   from /home/2zr/build/ParaView/bin/libvtkClientServer.so
#16 0x7fffe93349ab in 
vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const, 
int) ()
   from /home/2zr/build/ParaView/bin/libvtkClientServer.so
#17 0x7fffe9334843 in 
vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const) () from 
/home/2zr/build/ParaView/bin/libvtkClientServer.so
#18 0x7fffeee5bc57 in 
vtkSelfConnection::ProcessStreamLocally(vtkClientServerStream) () from

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