Re: [PyMOL] APBS-electrostatics
It looks like quite a few people are actually still using the electrostatics wizard, so I updated the code on my website (http://www.umich.edu/~mlerner/PyMOL). For what it's worth, I just use the visualization pane of the APBS plugin these days, but I understand if the wizard is a little cleaner for some purposes. -- Biophysics Graduate Student Carlson Lab, University of Michigan http://www.umich.edu/~mlerner On 10/4/07, DeLano Scientific del...@delsci.info wrote: Gianluigi, The API changed in PyMOL 1.0 in order to accomodate multiple PyMOL instances in a single Python interpreter -- your wizard needs to be updated so that the init method takes a _self keyword argument: def __init__(, _self=cmd): ... -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor! -WLD From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Gianluigi Caltabiano Sent: Thursday, October 04, 2007 7:55 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] APBS-electrostatics Hi everybody, I am trying to use the electrostatic wizard to read some .dx file I made. It always worked..since I up-graded to pymol 1.0. Now it doesn't work ( I have already checked the modification in __init__.py file, it's fine). The message it give to me is: Traceback (most recent call last): File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\parser.py, line 251, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 86, in wizard r = _wizard(name,arg,kwd,0) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 45, in _wizard wiz = apply(getattr(mod_obj,oname),arg,kwd) TypeError: __init__() got an unexpected keyword argument '_self' Thank you for your help Gianluigi Caltabiano L'email della prossima generazione? Puoi averla con la nuova Yahoo! Mail - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now http://get.splunk.com/ ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] APBS-electrostatics
Hi everybody, I am trying to use the electrostatic wizard to read some .dx file I made. It always worked..since I up-graded to pymol 1.0. Now it doesn't work ( I have already checked the modification in __init__.py file, it's fine). The message it give to me is: Traceback (most recent call last): File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\parser.py, line 251, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 86, in wizard r = _wizard(name,arg,kwd,0) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 45, in _wizard wiz = apply(getattr(mod_obj,oname),arg,kwd) TypeError: __init__() got an unexpected keyword argument '_self' Thank you for your help Gianluigi Caltabiano - - L'email della prossima generazione? Puoi averla con la nuova Yahoo! Mail
Re: [PyMOL] APBS-electrostatics
Gianluigi, The API changed in PyMOL 1.0 in order to accomodate multiple PyMOL instances in a single Python interpreter -- your wizard needs to be updated so that the init method takes a _self keyword argument: def __init__(, _self=cmd): ... -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor! -WLD _ From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Gianluigi Caltabiano Sent: Thursday, October 04, 2007 7:55 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] APBS-electrostatics Hi everybody, I am trying to use the electrostatic wizard to read some .dx file I made. It always worked..since I up-graded to pymol 1.0. Now it doesn't work ( I have already checked the modification in __init__.py file, it's fine). The message it give to me is: Traceback (most recent call last): File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\parser.py, line 251, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 86, in wizard r = _wizard(name,arg,kwd,0) File C:\Archivos de programa\DeLano Scientific\PyMOL/modules\pymol\wizarding.py, line 45, in _wizard wiz = apply(getattr(mod_obj,oname),arg,kwd) TypeError: __init__() got an unexpected keyword argument '_self' Thank you for your help Gianluigi Caltabiano _ _ L'email della prossima generazione? Puoi averla con la nuova http://us.rd.yahoo.com/mail/it/taglines/hotmail/nowyoucan/nextgen/*http://i t.docs.yahoo.com/nowyoucan.html Yahoo! Mail
