Re: [R-SIG-Mac] R-alpha on SL system
Thanks Simon. Starting with a fresh source directory and building one level up from the source did indeed resolve everything just as https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html My usual set of packages also installed fine except for rgl once I realized that I need to invoke R as R --arch x86_64. Thanks for your patience, Roger PS. Is the rgl a known issue? I get checking for X... no configure: error: X11 not found but required, configure aborted. ERROR: configuration failed for package 'rgl' * removing '/Library/Frameworks/R.framework/Versions/2.10/Resources/ library/rgl' but sessionInfo() R version 2.10.0 alpha (2009-10-09 r50012) i386-apple-darwin10.0.0 locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base capabilities() jpeg png tifftcltk X11 aqua http/ftp sockets TRUE TRUEFALSE TRUE TRUE TRUE TRUE TRUE libxml fifo clediticonv NLS profmemcairo TRUE TRUE TRUE TRUE TRUEFALSEFALSE On Oct 11, 2009, at 3:36 PM, Simon Urbanek wrote: Roger, from your logs you are still using the wrong compilers (missing - arch flags) and not following the instructions (you're building in the sources as far as I can tell). Please make sure you're setting FC and F77 correctly including the -arch flag and don't build in the sources. If in doubt, please send us the exact configure line you're using. (And make sure you remove everything in the build directory before re-trying). Cheers, Simon On Oct 11, 2009, at 3:54 PM, Roger Koenker wrote: Simon, I read this thread, https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006463.html but didn't see this post: https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html Unfortunately, I can't get this to work either, the configure step seems to end normally, although there is a warning about missing packages. but make -j8 make install ends with error: cannot use Fortran. But yzzy: which gfortran /usr/local/bin/gfortran yzzy: gfortran --version GNU Fortran (GCC) 4.2.3 Copyright (C) 2007 Free Software Foundation, Inc. As for the binary install, the pkg installer produced eventually a window that said Failed in red rather than the usual green Installation Successful -- but it wasn't clear where to look for the entrails. I've replaced the old config.log on the web with the new one based on the recommended configure lines. On Oct 11, 2009, at 2:21 PM, Simon Urbanek wrote: Roger, please read the list before posing - I have even posted detailed instructions for SL (you are mixing 32 bit and 64 bit). As for the binary install -- can you, please, share the details with us? Thanks, Simon On Oct 11, 2009, at 1:19 PM, Roger Koenker wrote: I am trying to install R-alpha R-2.10.0 (yesterdays version) on a mac pro system that I've recently upgraded to SL and xcode 3.2. I've tried both the binary install which fails, and building from source: the config.log file can be seen here: http://www.econ.uiuc.edu/~roger/config.log Version 2.9.2 built from sources without problems after the SL upgrade which I took as a good omen for the general sanity of the system, but apparently this was a mistake. I presume that this has something to do with conflicts with old gfortrans. I've installed gfortran 4.2.3 but perhaps there are remnants of older versions still hanging around? Many thanks for any hints, Roger ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
[R-SIG-Mac] R-alpha on SL system
I am trying to install R-alpha R-2.10.0 (yesterdays version) on a mac pro system that I've recently upgraded to SL and xcode 3.2. I've tried both the binary install which fails, and building from source: the config.log file can be seen here: http://www.econ.uiuc.edu/~roger/config.log Version 2.9.2 built from sources without problems after the SL upgrade which I took as a good omen for the general sanity of the system, but apparently this was a mistake. I presume that this has something to do with conflicts with old gfortrans. I've installed gfortran 4.2.3 but perhaps there are remnants of older versions still hanging around? Many thanks for any hints, Roger ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] R-alpha on SL system
On Oct 11, 2009, at 6:22 PM, Roger Koenker wrote: Thanks Simon. Starting with a fresh source directory and building one level up from the source did indeed resolve everything just as https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html My usual set of packages also installed fine except for rgl once I realized that I need to invoke R as R --arch x86_64. Thanks for your patience, Roger PS. Is the rgl a known issue? I get checking for X... no configure: error: X11 not found but required, configure aborted. ERROR: configuration failed for package 'rgl' * removing '/Library/Frameworks/R.framework/Versions/2.10/Resources/ library/rgl' I'll have to check, on SL you may need to specify /usr/X11 -- the autodetection sometimes doesn't work, but I' don't remember what rgl uses... I'll check it out later (the build machine is still 10.5 so the binaries should not be affected). Thanks, Simon but sessionInfo() R version 2.10.0 alpha (2009-10-09 r50012) i386-apple-darwin10.0.0 locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base capabilities() jpeg png tifftcltk X11 aqua http/ftp sockets TRUE TRUEFALSE TRUE TRUE TRUE TRUE TRUE libxml fifo clediticonv NLS profmemcairo TRUE TRUE TRUE TRUE TRUEFALSEFALSE On Oct 11, 2009, at 3:36 PM, Simon Urbanek wrote: Roger, from your logs you are still using the wrong compilers (missing - arch flags) and not following the instructions (you're building in the sources as far as I can tell). Please make sure you're setting FC and F77 correctly including the -arch flag and don't build in the sources. If in doubt, please send us the exact configure line you're using. (And make sure you remove everything in the build directory before re-trying). Cheers, Simon On Oct 11, 2009, at 3:54 PM, Roger Koenker wrote: Simon, I read this thread, https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006463.html but didn't see this post: https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html Unfortunately, I can't get this to work either, the configure step seems to end normally, although there is a warning about missing packages. but make -j8 make install ends with error: cannot use Fortran. But yzzy: which gfortran /usr/local/bin/gfortran yzzy: gfortran --version GNU Fortran (GCC) 4.2.3 Copyright (C) 2007 Free Software Foundation, Inc. As for the binary install, the pkg installer produced eventually a window that said Failed in red rather than the usual green Installation Successful -- but it wasn't clear where to look for the entrails. I've replaced the old config.log on the web with the new one based on the recommended configure lines. On Oct 11, 2009, at 2:21 PM, Simon Urbanek wrote: Roger, please read the list before posing - I have even posted detailed instructions for SL (you are mixing 32 bit and 64 bit). As for the binary install -- can you, please, share the details with us? Thanks, Simon On Oct 11, 2009, at 1:19 PM, Roger Koenker wrote: I am trying to install R-alpha R-2.10.0 (yesterdays version) on a mac pro system that I've recently upgraded to SL and xcode 3.2. I've tried both the binary install which fails, and building from source: the config.log file can be seen here: http://www.econ.uiuc.edu/~roger/config.log Version 2.9.2 built from sources without problems after the SL upgrade which I took as a good omen for the general sanity of the system, but apparently this was a mistake. I presume that this has something to do with conflicts with old gfortrans. I've installed gfortran 4.2.3 but perhaps there are remnants of older versions still hanging around? Many thanks for any hints, Roger ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] R-alpha on SL system
This is normal. Download rgl and use configure-args. -- J. On Oct 11, 2009, at 17:12 , Simon Urbanek wrote: PS. Is the rgl a known issue? I get checking for X... no configure: error: X11 not found but required, configure aborted. ERROR: configuration failed for package 'rgl' * removing '/Library/Frameworks/R.framework/Versions/2.10/Resources/library/rgl' === Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of Statistics; Director: UCLA Center for Environmental Statistics (CES); Editor: Journal of Multivariate Analysis, Journal of Statistical Software; US mail: 8125 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: dele...@stat.ucla.edu .mac: jdeleeuw ++ aim: deleeuwjan ++ skype: j_deleeuw homepages: http://gifi.stat.ucla.edu ++ http://www.cuddyvalley.org - No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au - ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
