Re: [R-SIG-Mac] [R] .libPaths(new) stopped working in 2.10
On Dec 9, 2009, at 21:51 , David Winsemius wrote: On Dec 7, 2009, at 10:04 AM, Simon Urbanek wrote: On Dec 6, 2009, at 14:45 , David Winsemius wrote: On Dec 6, 2009, at 2:32 PM, Alexy Khrabrov wrote: I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv(HOME),/Library/R/,paste(R.version $major,as.integer(R.version$minor),sep='.'),/library,sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I installed and auto-upgrade with a script. However, in R 2.10's Mac OSX GUI, .libPaths(new) does nothing... Did its behavior change? What is new? .libPaths() would need a character argument. Are you referring to this Grab picture of a checkbox in the Startup GUI preferences: pastedGraphic.tiff (probably not passed through the r-help-list-server) I actually have the inverse problem. It has been created and I would like to remove it. Well, then do so :). I did so and restarted. I checked my ~/.Rprofile setting and that is not the source of the persistent non-R.Framework libpath. I reviewed the Macs section of the Installation Manual and it tells me that it's basically a Unix device and that I should review the general R instructions. Reading the Installation and Administration Guide in section 6 I see several areas about which I am uninformed: R.home(component=home) [1] /Library/Frameworks/R.framework/Resources I don't have an R_HOME/etc/Rprofile.site I think I have found my problem because: Sys.getenv(R_LIBS_USER) R_LIBS_USER ~/Library/R/2.10/library So I tried Sys.setenv(R_LIB_USER = ) I thought from the help page that this would report a logical value for success or failure, but got neither. Wish me luck. Uh - all that has nothing to do with what I was saying - remove the ~/ Library/R/2.10/library directory, that's all you need to do ... Cheers, Simon -- David Cheers, Simon Changing the mailing list to r-sig-mac to which Alexy should have sent this. -- David Winsemius, MD Heritage Laboratories West Hartford, CT ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] [R] .libPaths(new) stopped working in 2.10
On Dec 7, 2009, at 10:04 AM, Simon Urbanek wrote: On Dec 6, 2009, at 14:45 , David Winsemius wrote: On Dec 6, 2009, at 2:32 PM, Alexy Khrabrov wrote: I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv(HOME),/Library/R/,paste(R.version $major,as.integer(R.version$minor),sep='.'),/library,sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I installed and auto-upgrade with a script. However, in R 2.10's Mac OSX GUI, .libPaths(new) does nothing... Did its behavior change? What is new? .libPaths() would need a character argument. Are you referring to this Grab picture of a checkbox in the Startup GUI preferences: pastedGraphic.tiff (probably not passed through the r-help-list-server) I actually have the inverse problem. It has been created and I would like to remove it. Well, then do so :). I did so and restarted. I checked my ~/.Rprofile setting and that is not the source of the persistent non-R.Framework libpath. I reviewed the Macs section of the Installation Manual and it tells me that it's basically a Unix device and that I should review the general R instructions. Reading the Installation and Administration Guide in section 6 I see several areas about which I am uninformed: R.home(component=home) [1] /Library/Frameworks/R.framework/Resources I don't have an R_HOME/etc/Rprofile.site I think I have found my problem because: Sys.getenv(R_LIBS_USER) R_LIBS_USER ~/Library/R/2.10/library So I tried Sys.setenv(R_LIB_USER = ) I thought from the help page that this would report a logical value for success or failure, but got neither. Wish me luck. -- David Cheers, Simon Changing the mailing list to r-sig-mac to which Alexy should have sent this. -- David Winsemius, MD Heritage Laboratories West Hartford, CT ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] [R] .libPaths(new) stopped working in 2.10
On Dec 6, 2009, at 14:45 , David Winsemius wrote: On Dec 6, 2009, at 2:32 PM, Alexy Khrabrov wrote: I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv(HOME),/Library/R/,paste(R.version $major,as.integer(R.version$minor),sep='.'),/library,sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I installed and auto-upgrade with a script. However, in R 2.10's Mac OSX GUI, .libPaths(new) does nothing... Did its behavior change? No - if it doesn't appear, it means the directory doesn't exist. (This was always the case, that's nothing new in 2.10). Cheers, Simon What is new? .libPaths() would need a character argument. Are you referring to this Grab picture of a checkbox in the Startup GUI preferences: pastedGraphic.tiff (probably not passed through the r-help-list-server) I actually have the inverse problem. It has been created and I would like to remove it. Changing the mailing list to r-sig-mac to which Alexy should have sent this. Cheers, Alexy __ r-h...@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] [R] .libPaths(new) stopped working in 2.10
On Dec 6, 2009, at 14:45 , David Winsemius wrote: On Dec 6, 2009, at 2:32 PM, Alexy Khrabrov wrote: I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv(HOME),/Library/R/,paste(R.version $major,as.integer(R.version$minor),sep='.'),/library,sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I installed and auto-upgrade with a script. However, in R 2.10's Mac OSX GUI, .libPaths(new) does nothing... Did its behavior change? What is new? .libPaths() would need a character argument. Are you referring to this Grab picture of a checkbox in the Startup GUI preferences: pastedGraphic.tiff (probably not passed through the r-help-list-server) I actually have the inverse problem. It has been created and I would like to remove it. Well, then do so :). Cheers, Simon Changing the mailing list to r-sig-mac to which Alexy should have sent this. Cheers, Alexy __ r-h...@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] [R] .libPaths(new) stopped working in 2.10
On Dec 6, 2009, at 2:32 PM, Alexy Khrabrov wrote: I used to have the following in my .Rprofile: if (length(.libPaths())==1) .libPaths(paste(Sys.getenv(HOME),/Library/R/,paste(R.version $major,as.integer(R.version$minor),sep='.'),/library,sep='')) -- and it added my user-defined library directory. Then I installed packages there, so during an upgrade, I'd know exactly which packages I installed and auto-upgrade with a script. However, in R 2.10's Mac OSX GUI, .libPaths(new) does nothing... Did its behavior change? What is new? .libPaths() would need a character argument. Are you referring to this Grab picture of a checkbox in the Startup GUI preferences: inline: pastedGraphic.tiff (probably not passed through the r-help-list-server) I actually have the inverse problem. It has been created and I would like to remove it. Changing the mailing list to r-sig-mac to which Alexy should have sent this. Cheers, Alexy __ r-h...@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
