[med-svn] [Git][med-team/python-gffutils][master] Update metadata - update of bio.tools

Steffen Möller pushed to branch master at Debian Med / python-gffutils Commits: d8a7e7a0 by Steffen Möller at 2020-12-05T15:08:15+00:00 Update metadata - update of bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian

[med-svn] [Git][med-team/filtlong][master] Update metadata - added ref to bio.tools

Steffen Möller pushed to branch master at Debian Med / filtlong Commits: ad9b4e1f by Steffen Möller at 2020-12-05T15:05:46+00:00 Update metadata - added ref to bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/busco][master] Update metadata - added ref to bio.tools

Steffen Möller pushed to branch master at Debian Med / busco Commits: 4a10d909 by Steffen Möller at 2020-12-05T01:34:12+00:00 Update metadata - added ref to bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/ncbi-blastplus][master] Update metadata - fixed indenting.

Steffen Möller pushed to branch master at Debian Med / ncbi-blastplus Commits: f92fd0af by Steffen Möller at 2020-12-04T23:58:31+00:00 Update metadata - fixed indenting. - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/seqan][master] Update metadata - update bio.tools

Steffen Möller pushed to branch master at Debian Med / seqan Commits: d3697931 by Steffen Möller at 2020-12-04T15:33:08+00:00 Update metadata - update bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream/metadata

[med-svn] [Git][med-team/pyranges][master] Update metadata - yet another fix

Steffen Möller pushed to branch master at Debian Med / pyranges Commits: 407af4f7 by Steffen Möller at 2020-12-04T15:10:28+00:00 Update metadata - yet another fix - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream/metadata

[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added all the qiime packages

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: e056dc1d by Steffen Möller at 2020-12-02T22:29:18+00:00 Update bio-dev - added all the qiime packages - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev

Re: [RFS] Libnewuoa

Hello, On 03.12.20 10:07, Andrius Merkys wrote: > Hi Maarten, > > On 2020-12-02 21:42, Maarten L. Hekkelman wrote: >> package is at https://salsa.debian.org/med-team/libnewuoa >> >> now, let's see what I will learn this time... ;-) > I noticed there are patches for CMakeLists.txt and pkg-config.

[med-svn] [Git][med-team/mcaller] Pushed new tag upstream/1.0

Steffen Möller pushed new tag upstream/1.0 at Debian Med / mcaller -- View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/tree/upstream/1.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/mcaller][upstream] New upstream version 1.0

Steffen Möller pushed to branch upstream at Debian Med / mcaller Commits: 2c8a9480 by Steffen Möller at 2020-12-03T00:09:44+01:00 New upstream version 1.0 - - - - - 1 changed file: - README.md Changes: = README.md

[med-svn] [Git][med-team/mcaller][pristine-tar] pristine-tar data for mcaller_1.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / mcaller Commits: 85abd075 by Steffen Möller at 2020-12-03T00:10:12+01:00 pristine-tar data for mcaller_1.0.orig.tar.gz - - - - - 2 changed files: - + mcaller_1.0.orig.tar.gz.delta - + mcaller_1.0.orig.tar.gz.id Changes

[Blends-commit] [Git][blends-team/med][master] Update bio - added mcaller

Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 7662399f by Steffen Möller at 2020-12-02T22:56:26+00:00 Update bio - added mcaller - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio

[med-svn] [Git][med-team/bcbio][master] Update TODO

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: d94cceaa by Steffen Möller at 2020-12-02T22:24:08+00:00 Update TODO - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO = @@ -50,7

Re: Is bcbio good to go?

Hi Nilesh, On 02.12.20 21:58, Nilesh Patra wrote: > Is there any update on the status of bcbio? >From some intial 4 it is now 9 tests that pass - of >80 and a manually installed GATK. > I do not see any missing remarks in the spreadsheet, but I admittedly > do not know a way to parse the columns

Re: RFS: q2-sample-classifier

Hi Etienne, On 02.12.20 17:43, Étienne Mollier wrote: > Steffen Möller, on 2020-12-02 17:31:14 +0100: >> On 02.12.20 17:22, Étienne Mollier wrote: >>> Steffen Möller, on 2020-12-02 14:51:35 +0100: >>> > I had a quick look copyright-wise, and spotted versione

[med-svn] [Git][med-team/q2-sample-classifier] Pushed new tag debian/2020.11.0-1

Steffen Möller pushed new tag debian/2020.11.0-1 at Debian Med / q2-sample-classifier -- View it on GitLab: https://salsa.debian.org/med-team/q2-sample-classifier/-/tree/debian/2020.11.0-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-sample-classifier][master] Completed d/copyright - Thanks, Etienne!

Steffen Möller pushed to branch master at Debian Med / q2-sample-classifier Commits: ce11327f by Steffen Moeller at 2020-12-02T18:14:07+01:00 Completed d/copyright - Thanks, Etienne! - - - - - 1 changed file: - debian/copyright Changes: = debian

[med-svn] [Git][med-team/q2-demux] Pushed new tag upstream/2020.11.0

Steffen Möller pushed new tag upstream/2020.11.0 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/upstream/2020.11.0 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-demux][pristine-tar] pristine-tar data for q2-demux_2020.11.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-demux Commits: d7dd2f8d by Steffen Moeller at 2020-12-02T17:50:28+01:00 pristine-tar data for q2-demux_2020.11.0.orig.tar.gz - - - - - 2 changed files: - + q2-demux_2020.11.0.orig.tar.gz.delta - + q2-demux_2020.11.0

[med-svn] [Git][med-team/q2-demux][upstream] New upstream version 2020.11.0

Steffen Möller pushed to branch upstream at Debian Med / q2-demux Commits: 2b61d085 by Steffen Moeller at 2020-12-02T17:50:26+01:00 New upstream version 2020.11.0 - - - - - 30 changed files: - LICENSE - q2_demux/__init__.py - q2_demux/_demux.py - q2_demux/_ecc.py - q2_demux/_filter.py

[med-svn] [Git][med-team/q2-demux][master] 9 commits: New upstream version 2020.11.0

Steffen Möller pushed to branch master at Debian Med / q2-demux Commits: 2b61d085 by Steffen Moeller at 2020-12-02T17:50:26+01:00 New upstream version 2020.11.0 - - - - - 7b51af5e by Steffen Moeller at 2020-12-02T17:50:26+01:00 routine-update: New upstream version - - - - - f0d334a8

[med-svn] [Git][med-team/q2templates] Pushed new tag debian/2020.11.0+dfsg-1

Steffen Möller pushed new tag debian/2020.11.0+dfsg-1 at Debian Med / q2templates -- View it on GitLab: https://salsa.debian.org/med-team/q2templates/-/tree/debian/2020.11.0+dfsg-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2templates] Pushed new tag upstream/2020.11.0+dfsg

Steffen Möller pushed new tag upstream/2020.11.0+dfsg at Debian Med / q2templates -- View it on GitLab: https://salsa.debian.org/med-team/q2templates/-/tree/upstream/2020.11.0+dfsg You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2templates][upstream] New upstream version 2020.11.0+dfsg

Steffen Möller pushed to branch upstream at Debian Med / q2templates Commits: 68a67cc9 by Steffen Moeller at 2020-12-02T17:38:30+01:00 New upstream version 2020.11.0+dfsg - - - - - 13 changed files: - LICENSE - ci/recipe/meta.yaml - q2templates/__init__.py - q2templates/_templates.py

[med-svn] [Git][med-team/q2templates][pristine-tar] pristine-tar data for q2templates_2020.11.0+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2templates Commits: 48c85a46 by Steffen Moeller at 2020-12-02T17:38:30+01:00 pristine-tar data for q2templates_2020.11.0+dfsg.orig.tar.xz - - - - - 2 changed files: - + q2templates_2020.11.0+dfsg.orig.tar.xz.delta

Re: RFS: q2-sample-classifier

On 02.12.20 17:22, Étienne Mollier wrote: > Hi Steffen, > > Steffen Möller, on 2020-12-02 14:51:35 +0100: >> https://salsa.debian.org/med-team/q2-sample-classifier.git/ >> >> Well ... lintian clean, cowbuilder needs to wait for qiime, >> please kindly cross-che

RFS: q2-sample-classifier

https://salsa.debian.org/med-team/q2-sample-classifier.git/ Well ... lintian clean, cowbuilder needs to wait for qiime, please kindly cross-check to make that I have not messed anything up too badly. Many thanks, Steffen (hoping ITPs also count for the calendar) We should actually think of

[med-svn] [Git][med-team/q2-sample-classifier] Pushed new tag upstream/2020.11.0

Steffen Möller pushed new tag upstream/2020.11.0 at Debian Med / q2-sample-classifier -- View it on GitLab: https://salsa.debian.org/med-team/q2-sample-classifier/-/tree/upstream/2020.11.0 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-sample-classifier][master] 8 commits: New upstream version 2020.11.0

Steffen Möller pushed to branch master at Debian Med / q2-sample-classifier Commits: 31dd5bad by Steffen Moeller at 2020-12-02T13:34:25+01:00 New upstream version 2020.11.0 - - - - - 9446d8d5 by Steffen Moeller at 2020-12-02T13:34:25+01:00 routine-update: New upstream version

[med-svn] [Git][med-team/q2-sample-classifier][pristine-tar] pristine-tar data for q2-sample-classifier_2020.11.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-sample-classifier Commits: ba6c39ca by Steffen Moeller at 2020-12-02T13:34:27+01:00 pristine-tar data for q2-sample-classifier_2020.11.0.orig.tar.gz - - - - - 2 changed files: - + q2-sample-classifier_2020.11.0

Re: [RFS] q2-types 2020.11.0-1

Hi Étienne, On 02.12.20 13:40, Étienne Mollier wrote: > Hi Steffen, Hi Andreas, > > Andreas Tille, on 2020-12-02 09:27:51 +0100: >> On Wed, Dec 02, 2020 at 12:56:36AM +0100, Steffen Möller wrote: >> >>> Are you aware of >>>

[med-svn] [Git][med-team/q2-sample-classifier][master] Added refs to registries

Steffen Möller pushed to branch master at Debian Med / q2-sample-classifier Commits: 96c4b451 by Steffen Moeller at 2020-12-02T13:33:38+01:00 Added refs to registries - - - - - 1 changed file: - + debian/upstream/metadata Changes: = debian/upstream

[med-svn] [Git][med-team/q2-taxa][upstream] New upstream version 2020.11.0

Steffen Möller pushed to branch upstream at Debian Med / q2-taxa Commits: ba46003d by Steffen Moeller at 2020-12-02T13:13:03+01:00 New upstream version 2020.11.0 - - - - - 12 changed files: - LICENSE - q2_taxa/__init__.py - q2_taxa/_method.py - q2_taxa/_util.py - q2_taxa/_version.py

[med-svn] [Git][med-team/q2-taxa][pristine-tar] pristine-tar data for q2-taxa_2020.11.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-taxa Commits: f5ece1a0 by Steffen Moeller at 2020-12-02T13:13:04+01:00 pristine-tar data for q2-taxa_2020.11.0.orig.tar.gz - - - - - 2 changed files: - + q2-taxa_2020.11.0.orig.tar.gz.delta - + q2-taxa_2020.11.0.orig.tar.gz.id

[med-svn] [Git][med-team/q2-feature-classifier][master] Added ref to conda and bio.tools

Steffen Möller pushed to branch master at Debian Med / q2-feature-classifier Commits: aff5405f by Steffen Moeller at 2020-12-02T13:07:37+01:00 Added ref to conda and bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag upstream/2020.11.0+dfsg

Steffen Möller pushed new tag upstream/2020.11.0+dfsg at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/upstream/2020.11.0+dfsg You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table] Pushed new tag debian/2020.11.0+dfsg-1

Steffen Möller pushed new tag debian/2020.11.0+dfsg-1 at Debian Med / q2-feature-table -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-table/-/tree/debian/2020.11.0+dfsg-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-feature-table][upstream] New upstream version 2020.11.0+dfsg

Steffen Möller pushed to branch upstream at Debian Med / q2-feature-table Commits: 927393af by Steffen Moeller at 2020-12-02T11:48:44+01:00 New upstream version 2020.11.0+dfsg - - - - - 30 changed files: - LICENSE - ci/recipe/meta.yaml - q2_feature_table/__init__.py - q2_feature_table

[med-svn] [Git][med-team/q2-feature-table][pristine-tar] pristine-tar data for q2-feature-table_2020.11.0+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-feature-table Commits: e00142b9 by Steffen Moeller at 2020-12-02T11:48:44+01:00 pristine-tar data for q2-feature-table_2020.11.0+dfsg.orig.tar.xz - - - - - 2 changed files: - + q2-feature-table_2020.11.0+dfsg.orig.tar.xz.delta

[med-svn] [Git][med-team/q2-feature-table][master] 9 commits: New upstream version 2020.11.0+dfsg

Steffen Möller pushed to branch master at Debian Med / q2-feature-table Commits: 927393af by Steffen Moeller at 2020-12-02T11:48:44+01:00 New upstream version 2020.11.0+dfsg - - - - - 458c952f by Steffen Moeller at 2020-12-02T11:48:44+01:00 routine-update: New upstream version

Re: [RFS] q2-types 2020.11.0-1

Hi Étienne, On 01.12.20 23:52, Étienne Mollier wrote: > Good day, > > I pushed q2-types 2020.11.0-1. Past this one which seems rather > fundamental, I think other q2-* modules will be easily worked on > in parallel: > > https://salsa.debian.org/med-team/q2-types > > Please consider review

[med-svn] [Git][med-team/q2-types][master] ah, thought this was already uploaded - sponsoring

Steffen Möller pushed to branch master at Debian Med / q2-types Commits: 7051842f by Steffen Moeller at 2020-12-02T00:45:58+01:00 ah, thought this was already uploaded - sponsoring - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes

[med-svn] [Git][med-team/q2-types] Pushed new tag debian/2020.11.0-1

Steffen Möller pushed new tag debian/2020.11.0-1 at Debian Med / q2-types -- View it on GitLab: https://salsa.debian.org/med-team/q2-types/-/tree/debian/2020.11.0-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-types] Deleted tag debian/2020.11.0-1

Steffen Möller deleted tag debian/2020.11.0-1 at Debian Med / q2-types -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag upstream/2020.2.0

Steffen Möller pushed new tag upstream/2020.2.0 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/upstream/2020.2.0 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag debian/2020.11.0-1

Steffen Möller pushed new tag debian/2020.11.0-1 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/debian/2020.11.0-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt] Pushed new tag upstream/2020.11.0

Steffen Möller pushed new tag upstream/2020.11.0 at Debian Med / q2-cutadapt -- View it on GitLab: https://salsa.debian.org/med-team/q2-cutadapt/-/tree/upstream/2020.11.0 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/q2-cutadapt][pristine-tar] 2 commits: pristine-tar data for q2-cutadapt_2020.2.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / q2-cutadapt Commits: 5ee0679a by Steffen Moeller at 2020-06-10T16:20:35+02:00 pristine-tar data for q2-cutadapt_2020.2.0.orig.tar.gz - - - - - 84d9d5ba by Steffen Moeller at 2020-12-02T00:10:01+01:00 pristine-tar data for q2

[med-svn] [Git][med-team/q2-types][master] Updated version of qiime dependency

Steffen Möller pushed to branch master at Debian Med / q2-types Commits: 5619956c by Steffen Moeller at 2020-12-02T00:08:57+01:00 Updated version of qiime dependency - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

Re: qiime2 status update

Well done, Étienne! Does this mean that the many q2-xyz packages we can now also think about updating? Best, Steffen On 01.12.20 19:14, Étienne Mollier wrote: > Hi Andreas, > > Andreas Tille, on 2020-12-01 09:46:28 +0100: >> On Tue, Dec 01, 2020 at 12:06:45AM +0100, Étienne Mollier wrote: >>>

[med-svn] [Git][med-team/ncbi-igblast][master] 3 commits: New upstream version 1.17.0

Steffen Möller pushed to branch master at Debian Med / ncbi-igblast Commits: 5d58e146 by Steffen Moeller at 2020-11-29T20:45:54+01:00 New upstream version 1.17.0 - - - - - 9ed5df32 by Steffen Moeller at 2020-11-29T20:48:04+01:00 Update upstream source from tag upstream/1.17.0 Update

[med-svn] [Git][med-team/ncbi-igblast][upstream] New upstream version 1.17.0

Steffen Möller pushed to branch upstream at Debian Med / ncbi-igblast Commits: 5d58e146 by Steffen Moeller at 2020-11-29T20:45:54+01:00 New upstream version 1.17.0 - - - - - 30 changed files: - c++/compilers/unix/GCC.sh - c++/compilers/unix/ICC.sh - − c++/compilers/vs2013/msvcvars.bat - c

[med-svn] [Git][med-team/ncbi-igblast][pristine-tar] pristine-tar data for ncbi-igblast_1.17.0.orig.tar.gz

Steffen Möller pushed to branch pristine-tar at Debian Med / ncbi-igblast Commits: a19dbf01 by Steffen Moeller at 2020-11-29T20:48:03+01:00 pristine-tar data for ncbi-igblast_1.17.0.orig.tar.gz - - - - - 2 changed files: - + ncbi-igblast_1.17.0.orig.tar.gz.delta - + ncbi-igblast_1.17.0

[med-svn] [Git][med-team/peptidebuilder] Pushed new tag debian/1.1.0-1

Steffen Möller pushed new tag debian/1.1.0-1 at Debian Med / peptidebuilder -- View it on GitLab: https://salsa.debian.org/med-team/peptidebuilder/-/tree/debian/1.1.0-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/ncbi-igblast][master] Update metadata - added reference to 2013 paper

Steffen Möller pushed to branch master at Debian Med / ncbi-igblast Commits: a09339a7 by Steffen Möller at 2020-11-29T19:42:45+00:00 Update metadata - added reference to 2013 paper - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian

Re: RFS: PeptideBuilder

On 29.11.20 07:40, Nilesh Patra wrote: > Hi > > On Sun, 29 Nov, 2020, 5:23 am Steffen Möller, <mailto:steffen_moel...@gmx.de>> wrote: > > https://salsa.debian.org/med-team/peptidebuilder > <https://salsa.debian.org/med-team/peptidebuilder> > >

[med-svn] [Git][med-team/peptidebuilder][master] Upload.

Steffen Möller pushed to branch master at Debian Med / peptidebuilder Commits: 66d683f6 by Steffen Möller at 2020-11-29T19:24:51+01:00 Upload. - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

RFS: PeptideBuilder

https://salsa.debian.org/med-team/peptidebuilder lintian-clean, builds in chroot - I guess you may have ideas how to improve the testing. Many thanks! Steffen

[med-svn] [Git][med-team/peptidebuilder][master] Extending description.

Steffen Möller pushed to branch master at Debian Med / peptidebuilder Commits: 5b0ac798 by Steffen Möller at 2020-11-29T00:52:38+01:00 Extending description. - - - - - 2 changed files: - debian/control - debian/upstream/metadata Changes: = debian

[med-svn] [Git][med-team/peptidebuilder] Pushed new tag upstream/1.1.0

Steffen Möller pushed new tag upstream/1.1.0 at Debian Med / peptidebuilder -- View it on GitLab: https://salsa.debian.org/med-team/peptidebuilder/-/tree/upstream/1.1.0 You're receiving this email because of your account on salsa.debian.org

Re: New Jalview release -- hesitating on license

On 28.11.20 19:30, Pierre Gruet wrote: > Hi Andreas and Steffen, > > Le 28/11/2020 à 00:38, Steffen Möller a écrit : >> Hi Pierre, >> >> On 27.11.20 23:10, Andreas Tille wrote: >>> Hi Pierre, >>> >>> On Fri, Nov 27, 2020 at 10:48:1

Re: New Jalview release -- hesitating on license

Hi Pierre, On 27.11.20 23:10, Andreas Tille wrote: > Hi Pierre, > > On Fri, Nov 27, 2020 at 10:48:13PM +0100, Pierre Gruet wrote: >> I'm stumbling upon the license terms of a part of the code (which is >> important enough so that the whole program really needs it) of the new >> release of Jalview

[med-svn] [Git][med-team/sniffles][upstream] New upstream version 1.0.12b+ds

Steffen Möller pushed to branch upstream at Debian Med / sniffles Commits: 8ac1729c by Steffen Moeller at 2020-11-27T23:37:39+01:00 New upstream version 1.0.12b+ds - - - - - 2 changed files: - CMakeLists.txt - src/Paramer.h Changes: = CMakeLists.txt

[med-svn] [Git][med-team/sniffles] Pushed new tag upstream/1.0.12b+ds

Steffen Möller pushed new tag upstream/1.0.12b+ds at Debian Med / sniffles -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/-/tree/upstream/1.0.12b+ds You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/sniffles] Pushed new tag upstream/1.0.12+ds

Steffen Möller pushed new tag upstream/1.0.12+ds at Debian Med / sniffles -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/-/tree/upstream/1.0.12+ds You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/sniffles] Pushed new tag debian/1.0.12b+ds-1

Steffen Möller pushed new tag debian/1.0.12b+ds-1 at Debian Med / sniffles -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/-/tree/debian/1.0.12b+ds-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/sniffles][pristine-tar] pristine-tar data for sniffles_1.0.12b+ds.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / sniffles Commits: 3c1fcc25 by Steffen Moeller at 2020-11-27T23:37:39+01:00 pristine-tar data for sniffles_1.0.12b+ds.orig.tar.xz - - - - - 2 changed files: - + sniffles_1.0.12b+ds.orig.tar.xz.delta - + sniffles_1.0.12b

[med-svn] [Git][med-team/sniffles][master] 3 commits: Upstream accepted patch. New version.

Steffen Möller pushed to branch master at Debian Med / sniffles Commits: 40d369f7 by Steffen Moeller at 2020-11-27T23:36:28+01:00 Upstream accepted patch. New version. - - - - - 8ac1729c by Steffen Moeller at 2020-11-27T23:37:39+01:00 New upstream version 1.0.12b+ds - - - - - 62a65df5

[med-svn] [Git][med-team/python-cgecore] Pushed new tag debian/1.5.6+ds-1

Steffen Möller pushed new tag debian/1.5.6+ds-1 at Debian Med / python-cgecore -- View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/tree/debian/1.5.6+ds-1 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-cgecore] Pushed new tag upstream/1.5.6+ds

Steffen Möller pushed new tag upstream/1.5.6+ds at Debian Med / python-cgecore -- View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/tree/upstream/1.5.6+ds You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-cgecore] Pushed new tag upstream/1.5.5+ds

Steffen Möller pushed new tag upstream/1.5.5+ds at Debian Med / python-cgecore -- View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/tree/upstream/1.5.5+ds You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-cgecore][upstream] New upstream version 1.5.6+ds

Steffen Möller pushed to branch upstream at Debian Med / python-cgecore Commits: 9875aef4 by Steffen Moeller at 2020-11-27T22:43:01+01:00 New upstream version 1.5.6+ds - - - - - 3 changed files: - PKG-INFO - cgecore/__init__.py - cgecore/blaster/blaster.py Changes

[med-svn] [Git][med-team/python-cgecore][master] 5 commits: New upstream version 1.5.6+ds

Steffen Möller pushed to branch master at Debian Med / python-cgecore Commits: 9875aef4 by Steffen Moeller at 2020-11-27T22:43:01+01:00 New upstream version 1.5.6+ds - - - - - c873700f by Steffen Moeller at 2020-11-27T22:43:01+01:00 routine-update: New upstream version - - - - - 67b2ef52

[med-svn] [Git][med-team/python-cgecore][pristine-tar] pristine-tar data for python-cgecore_1.5.6+ds.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / python-cgecore Commits: 3b08aee9 by Steffen Moeller at 2020-11-27T22:43:02+01:00 pristine-tar data for python-cgecore_1.5.6+ds.orig.tar.xz - - - - - 2 changed files: - + python-cgecore_1.5.6+ds.orig.tar.xz.delta - + python

done Re: [RFS] parasail

Thanks! On 27.11.20 13:26, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow > parasail

Re: Should Binaries provided by python-babel have a "python3-" prefix?

Hi Nilesh, On 26.11.20 13:16, Nilesh Patra wrote: > Hi, > > Currently src:python-babel provides 3 binaries: > > * python3-babel > * python-babel-doc > * python-babel-localedata > > of which python3-babel is the main binary, -babel-doc is for the > documentation and -babel-localedata is for

[med-svn] [Git][med-team/bcbio][master] Refinements after introducing gsort

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: c2788402 by Steffen Moeller at 2020-11-23T16:14:38+01:00 Refinements after introducing gsort - - - - - 3 changed files: - debian/control - + debian/patches/fixeFreetypePreload.patch - debian/patches/series Changes

Re: gsort_0.1.4-1_amd64.changes REJECTED

That makes sense. Reuploaded. Thanks! Steffen On 21.11.20 22:21, Nilesh Patra wrote: > Hi Steffen, > > This package has probably been accepted and this dak errors occurs due > to "Built-Using" field in d/control which I forgot to remove earlier. > Could you please $git pull from salsa and

Re: RFS: r-cran-ff

Hi Nilesh, On 19.11.20 20:18, Nilesh Patra wrote: > > On Thu, 19 Nov 2020 at 23:06, Steffen Möller <mailto:steffen_moel...@gmx.de>> wrote: > > At times I am surprised about what is out there that I was not > aware of. > A dependency for r-bioc-oligo. >

RFS: r-cran-ff

At times I am surprised about what is out there that I was not aware of. A dependency for r-bioc-oligo. https://salsa.debian.org/r-pkg-team/r-cran-ff The package efficiently maps large files  from disk to memory. Many thanks Steffen

RFS: r-bioc-affxparser

salsa.debian.org:r-pkg-team/r-bioc-affxparser.git In the queue are oligo and finally ArrayExpress. There is quite some compilation going on for affxparser, so this may well be worth to package. I had found that package only _after_ I had manually addressed the same. Sigh. Steffen

done Re: [RFS] mssstest

Thanks! On 18.11.20 13:35, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com > --allow  mssstest

Re: Project idea: port GKL to non-x86

On 18.11.20 10:35, Michael R. Crusoe wrote: > > > On Wed, 18 Nov 2020 at 10:32, Andreas Tille > wrote: > > Hi Michael, > > On Wed, Nov 18, 2020 at 12:00:29AM +0100, Michael Crusoe wrote: > > With https://salsa.debian.org/java-team/gkl/-/merge_requests/3 >

Re: [RFS] libcifpp

Hi Maarten, On 17.11.20 20:25, Maarten L. Hekkelman wrote: > Just pushed libcifpp into salsa. > > Libcifpp is a library to read, write and manipulate files containing > macro molecular structure info. It works internally with mmCIF > structures but can read and write PDB files as well. > > This

done Re: [RFS] python-treetime

Thanks! On 17.11.20 15:15, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow > python-treetime

[med-svn] [Git][med-team/vienna-rna] Pushed new tag upstream/2.4.16+dfsg

Steffen Möller pushed new tag upstream/2.4.16+dfsg at Debian Med / vienna-rna -- View it on GitLab: https://salsa.debian.org/med-team/vienna-rna/-/tree/upstream/2.4.16+dfsg You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/vienna-rna] Pushed new tag debian/2.4.16+dfsg-1

Steffen Möller pushed new tag debian/2.4.16+dfsg-1 at Debian Med / vienna-rna -- View it on GitLab: https://salsa.debian.org/med-team/vienna-rna/-/tree/debian/2.4.16+dfsg-1 You're receiving this email because of your account on salsa.debian.org

done Re: [RFS] lighter

Thanks! On 15.11.20 18:48, Nilesh Patra wrote: > Please grant DM access for lighter :-) > > (Daily RFS have started becoming annoying now :/ hence keeping low > verbosity) > > Nilesh

[med-svn] [Git][med-team/vienna-rna][upstream] New upstream version 2.4.16+dfsg

Steffen Möller pushed to branch upstream at Debian Med / vienna-rna Commits: 2ea4e704 by Steffen Moeller at 2020-11-15T18:52:24+01:00 New upstream version 2.4.16+dfsg - - - - - 30 changed files: - CHANGELOG.md - README.md - + RNA-Tutorial/Figures/2dfold_2_out_m.png - + RNA-Tutorial/Figures

[med-svn] [Git][med-team/vienna-rna][pristine-tar] pristine-tar data for vienna-rna_2.4.16+dfsg.orig.tar.xz

Steffen Möller pushed to branch pristine-tar at Debian Med / vienna-rna Commits: c12bf80b by Steffen Moeller at 2020-11-15T18:52:57+01:00 pristine-tar data for vienna-rna_2.4.16+dfsg.orig.tar.xz - - - - - 2 changed files: - + vienna-rna_2.4.16+dfsg.orig.tar.xz.delta - + vienna-rna_2.4.16

[med-svn] [Git][med-team/vienna-rna][master] 4 commits: New upstream version 2.4.16+dfsg

Steffen Möller pushed to branch master at Debian Med / vienna-rna Commits: 2ea4e704 by Steffen Moeller at 2020-11-15T18:52:24+01:00 New upstream version 2.4.16+dfsg - - - - - ed568875 by Steffen Moeller at 2020-11-15T18:52:57+01:00 Update upstream source from tag upstream/2.4.16+dfsg Update

[med-svn] [Git][med-team/mmseqs2][master] Disable -march=native also on !x86

Steffen Möller pushed to branch master at Debian Med / mmseqs2 Commits: 26f2e77b by Adrian Bunk at 2020-11-15T16:59:23+02:00 Disable -march=native also on !x86 - - - - - 1 changed file: - debian/rules Changes: = debian/rules

Re: /usr/bin/picard Re: bcbio will need another while - needs gatk

Hi Andreas, On 14.11.20 21:50, Andreas Tille wrote: > Hi Steffen, > > On Sat, Nov 14, 2020 at 08:18:48PM +0100, Steffen Möller wrote: >>> We have the workaround >>> >>> /usr/lib/debian-med/bin/ >>> >>> see for instance in eigens

Re: [RFS] gsort and dependencies (Was: /usr/bin/picard Re: bcbio will need another while - needs gatk)

Hi Nilesh, Impressive as usual. On 15.11.20 12:17, Nilesh Patra wrote: > Hi, > > I packaged gsort and the rest of the dependency chain as needed by > bcbio. Everything seems to build+pass its autopkgtests. > > The dependency chain is as follows: > > 1. golang-github-alexflint-go-scalar [1] > 2.

Re: /usr/bin/picard Re: bcbio will need another while - needs gatk

On 14.11.20 20:18, Steffen Möller wrote: > I presume you would be happy for me to put there a link from cnvkit.py > (like bcbio expects it) to /usr/bin/cnvkit, right? Update: I patched bcbio to find it. While looking at the source tree of the cnvkit wrapper of bcbio I found that it refe

Re: /usr/bin/picard Re: bcbio will need another while - needs gatk

Hi Nilesh, On 14.11.20 20:51, Nilesh Patra wrote: > > On Sun, 15 Nov 2020 at 00:49, Steffen Möller <mailto:steffen_moel...@gmx.de>> wrote: > > >> Should we have someone among us for who packaging go-based software > >> feels like easy then the new

[med-svn] [Git][med-team/bcbio][master] cnvkit executable now found without further ado

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 50ace2d9 by Steffen Moeller at 2020-11-14T22:30:48+01:00 cnvkit executable now found without further ado - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/cnvkitPath.patch - debian/patches

[med-svn] [Git][med-team/cnvkit][master] Added link from .py name

Steffen Möller pushed to branch master at Debian Med / cnvkit Commits: 1255aef5 by Steffen Moeller at 2020-11-14T21:05:08+01:00 Added link from .py name Wrong directory for bcbio, though. - - - - - 4 changed files: - debian/changelog - debian/examples → debian/cnvkit.examples - + debian

Re: /usr/bin/picard Re: bcbio will need another while - needs gatk

Hi Andreas, On 14.11.20 09:43, Andreas Tille wrote: > On Fri, Nov 13, 2020 at 10:25:39PM +0100, Steffen Möller wrote: >> I installed a binary distribution of gatk and then ran a bit into >> trouble over >> >> $ apt-file search /usr/bin/picard >> picard: /usr/bin

[med-svn] [Git][med-team/picard-tools] Pushed new tag upstream/2.23.8+dfsg

Steffen Möller pushed new tag upstream/2.23.8+dfsg at Debian Med / picard-tools -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/tree/upstream/2.23.8+dfsg You're receiving this email because of your account on salsa.debian.org

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