[Artemis-users] Problem with /codon_start rendering on -ve strand

to a similar problem, but it appeared to be resolved, but I've reproduced it somehow. I'm using Artemis 14.0.11. I'm also getting possibly related warnings - about 100 x RANGE NOT FOUND ..y. Any help appreciated! -- --Dr Torsten Seemann --Scientific Director : Victorian Bioinformatics Consortium

Re: [Artemis-users] BAM in Artemis

command, you don't put the .bam suffix ... it does it itself (ech). -- --Torsten Seemann --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash University, AUSTRALIA ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http

Re: [Artemis-users] Artemis compatibility with BLAST+

with BLAST+. It takes the BLAST cmdline options and translates them to a call to BLAST+ tools. If you renamed it blastall with a symlink, it might just work? --Torsten Seemann --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash University, AUSTRALIA

[Artemis-users] Disable there were warnings while reading message boxes?

it is because I am using some non-compliant tags in the 3 files, but I don't want to change the etc/options file to allow them, I just would like to disable the warnings at command line runtime. Is this possible? Any help appreciated, -- --Torsten Seemann --Victorian Bioinformatics Consortium, Dept

Re: [Artemis-users] Re: Can ACT do a protein comparison?

) are the same. -- Dr Torsten Seemann http://www.vicbioinformatics.com Victorian Bioinformatics Consortium, Monash University, Australia ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis

Re: [Artemis-users] FW: Tabbed data -

/function= FT /note=no ortholog found FT /note=obvious RBS site FT /EC_number=1.2.3.4 FT /EC_number=2.3.4.5 -- Torsten Seemann Victorian Bioinformatics Consortium, Monash University, Australia http://www.vicbioinformatics.com

Re: [Artemis-users] How to integrate hmmpfam in to artemis

run_ scripts as an example. And add 'hmmpfam' item to the 'feature_protein_programs' variable in the etc/options file. You should read http://www.sanger.ac.uk/Software/Artemis/v7/manual/runmenu.html and look in the etc/ directory of Artemis. -- Torsten Seemann [EMAIL PROTECTED] Victorian

[Artemis-users] Using new EMBL qualifiers

sequence (same species):INSD:AACN010222672.1 /inference=profile:tRNAscan:2.1 /inference=protein motif:InterPro:IPR001900 /inference=ab initio prediction:Genscan:2.0 -- Torsten Seemann [EMAIL PROTECTED] Victorian Bioinformatics Consortium