Hi
I am following up on a post I made in Jan 2006. I am currently trying to
use Artemis8 and GFF3. We are planning on using the CHADO schema from
GMOD and also, Gbrowse. We have the CHADO/Gbrowse part working with some
test GFF3 data that we have adapted from the Artemis GFF3 dump. Is there
any
Hi
Has anyone tried out
the MAGPIE/bluejay system out of http://magpie.ucalgary.edu and compared
ease of use/feature setswith artemis (web-based) or apollo -based
system for annotating microbial genomes. I am interested in your experiences and
what your conclusions were.
Specifically
Trying to do the same thing, multiple contigs
GFF3 file with FASTA included. GFF has only gene/mRNA/exon/CDS calls trying to
convert into EMBL.
Gets to the export point and then complains that destination format cannot
handle keys/qualifiers and then nothing...
Also the Write amino-acids to
Is there a way to convert multiple GFF3 files into EMBL format with the correct
join for euk. CDSes? Artemis is able to correctly read and write the GFF3
/EMBL file I have but how do I do this for multiple contig files. Bioperlish
options seem straightforward for a one exon -one CDS mode. I
Hi
I would like to be able to serve up genomes with BAM files as shown in
http://www.sanger.ac.uk/resources/software/artemis/ngs/. It is very handy for
our end-users to be able to visualize the a NGS alignments in a familiar tool.
Is there a how to set up artemis with Webstart and bam files
