Re: [Avogadro-Discuss] XTALOPT hangs if server connection lost

2015-08-21 Thread Patrick Avery
Hi Ron, We did actually fix this issue for the new update that is coming soon. Let me know if you have any issues with your fix and I can give you the updated version of that file. Thanks, Patrick On Friday, August 21, 2015, Cohen, Ronald rco...@carnegiescience.edu wrote: I think the attached

Re: [Avogadro-Discuss] How to use Avogadro from terminal?

2016-06-28 Thread Patrick Avery
Hi there Ana, If you just need a file translator, you might want to consider using Open Babel directly: http://openbabel.org/wiki/Main_Page Avogadro uses Open Babel for a lot of its file translations. After you compile/install open Babel and get the executables, you just need to run something

[Avogadro-Discuss] Yaehmop Additions

2016-09-04 Thread Patrick Avery
Hello Avogadro community! I've been working on implementing some extended Huckel theory calculations into Avogadro through YAeHMOP. It's pretty exciting what you can do with it! I've mostly been implementing band structures, but I'm moving to density of states next. Molecular orbitals should

[Avogadro-Discuss] GSoC 2016

2016-09-11 Thread Patrick Avery
Hey Avogadro community! Just wanted to provide an update for GSoC. I was fortunately able to pass! I added a lot of features to Avogadro 2 that will probably be helpful for materials science groups. Here is a list of the primary features I was able to add: - Added POSCAR (from Vienna Ab

Re: [Avogadro-Discuss] AutoOptimization

2016-10-23 Thread Patrick Avery
I have assigned “C:\Program Files (x86)\Avogadro\bin\avogadro.exe” > to open the Gaussian output files by default. If I open an output > file using Avogadro by directly clicking the file, I cannot use the force > fields. Not sure what is wrong. > > > > Cheers, > >

Re: [Avogadro-Discuss] Problem Compiling Avogadro v-1.2.0

2016-11-16 Thread Patrick Avery
One factor is that you probably don't want to use github.com/cryos/avogadro-squared The main avogadro repo is here: https://github.com/cryos/avogadro You might want to try compiling it again with that one instead. Just make sure openbabel and the other dependencies are found. Patrick On Tue,