Re: [basedb-devel] Mage-Tab export plugin

2011-09-15 Thread Pawel Sztromwasser
Great. Yes, I am planning to implement that as well. Pawel On 12/09/11 11:48, Gildas Le Corguillé wrote: Bonjour, This is good news if you can develope this plugin and I have enought datas on Base2 to test it :P My contribution on the former plugin Tab2Mage was to add a feature to manage

Re: [basedb-devel] Mage-Tab export plugin

2011-09-12 Thread Gildas Le Corguillé
Bonjour, This is good news if you can develope this plugin and I have enought datas on Base2 to test it :P My contribution on the former plugin Tab2Mage was to add a feature to manage pooling of samples (or extracts) and the possibility to have several Files[raw] per RawBioAssay (ex : one

Re: [basedb-devel] Mage-Tab export plugin

2011-09-01 Thread Gildas Le Corguillé
Hello, Our group still interesting in this kind of exporter. It was the main reason why we decided to use Base. We are in a public lab so we like to share :P Last year, I repaired the existing Tab2Mage-exporter module for Base. So if you need help, I can spend some time on that. But I'm not

Re: [basedb-devel] Mage-Tab export plugin

2011-09-01 Thread Pawel Sztromwasser
Hallo, I haven't been to the milestones page for a while, and I didn't know that work on BASE 3 was in such an advanced state. Great job guys! Support for sequencing data is excellent news for us. Anyway, before it is released and before we are ready to migrate, we will certainly have

[basedb-devel] Mage-Tab export plugin

2011-08-31 Thread Pawel Sztromwasser
Hello BASE developers, By the end of the year ArrayExpress is going to remove a possibility of importing experiments using the Tab2Mage format. The only supported format will be Mage-Tab. We have been extensively using Tab2Mage and the BASE plugin that exports experiments in this format. I

Re: [basedb-devel] Mage-Tab export plugin

2011-08-31 Thread Helen Parkinson
Dear Base developers, we have perl code that converts Tab2Mage into MAGE-TAB, which we use internally which we can make available. If the removal of Tab2mage is a serious problem for this community please let me know, we may run the conversion code as a service in that case, best regards