[base] raw bioassay listing workaround request

2008-11-19 Thread Bob MacCallum
I know it's not possible, but I'd like to be able to do these two things: 1. list raw bioassays with their Generic raw data or CEL file filenames 2. list raw bioassays with their inherited annotations (and, I guess, the same for all item types) And ideally, of course, 1 2 together. Does

Re: [base] Problem on Tomcat shutdown

2008-11-19 Thread Nicklas Nordborg
Moore, Jay wrote: Hi, I have the latest base2 installed, Mac OS X 10.5, java 1.6.0, Tomcat I can start and stop Tomcat, but I get the following message on shutdown in logs/catalina.out: SEVERE: IOException while saving persisted sessions: java.io.FileNotFoundException:

Re: [base] batchimport example spreadsheet seems corrupted

2008-11-19 Thread Jari Häkkinen
Micha Bayer wrote: Hi, I have been trying to look at the example file for the batch import but it seems corrupted. I am trying to open it in OpenOffice 2.3.0 and the file does load but then Calc instantly hangs. The file is created with OpenOffice 2.4 and works. I downloaded it and could

[base] error during batch import of raw bioassays -- BASE 2.8.4

2008-11-19 Thread Micha Bayer
Howdy again, I am trying out the new batch importers, and so far I have been impressed. But now I am stuck on the raw bioassays and I can't get the import to complete there. I have got it configured and the job starts running but then fails with this error: Invalid use of null. The

Re: [base] error during batch import of raw bioassays -- BASE 2.8.4

2008-11-19 Thread Nicklas Nordborg
Micha Bayer wrote: Howdy again, I am trying out the new batch importers, and so far I have been impressed. But now I am stuck on the raw bioassays and I can't get the import to complete there. I have got it configured and the job starts running but then fails with this error: